Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14780

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS14775 and ABIE41_RS14780 are separated by 136 nucleotidesABIE41_RS14780 and ABIE41_RS14785 are separated by 76 nucleotides ABIE41_RS14775: ABIE41_RS14775 - isovaleryl-CoA dehydrogenase, at 3,020,305 to 3,021,477 _RS14775 ABIE41_RS14780: ABIE41_RS14780 - CorA family divalent cation transporter, at 3,021,614 to 3,022,624 _RS14780 ABIE41_RS14785: ABIE41_RS14785 - GH25 family lysozyme, at 3,022,701 to 3,023,624 _RS14785 Position (kb) 3021 3022 3023Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3020.663 kb on + strand, within ABIE41_RS14775at 3020.664 kb on - strand, within ABIE41_RS14775at 3020.664 kb on - strand, within ABIE41_RS14775at 3020.664 kb on - strand, within ABIE41_RS14775at 3020.733 kb on - strand, within ABIE41_RS14775at 3020.733 kb on - strand, within ABIE41_RS14775at 3021.126 kb on - strand, within ABIE41_RS14775at 3021.126 kb on - strand, within ABIE41_RS14775at 3021.294 kb on + strand, within ABIE41_RS14775at 3021.294 kb on + strand, within ABIE41_RS14775at 3021.295 kb on - strand, within ABIE41_RS14775at 3021.295 kb on - strand, within ABIE41_RS14775at 3021.531 kb on - strandat 3021.532 kb on + strandat 3021.533 kb on - strandat 3021.802 kb on - strand, within ABIE41_RS14780at 3021.802 kb on - strand, within ABIE41_RS14780at 3021.802 kb on - strand, within ABIE41_RS14780at 3021.804 kb on - strand, within ABIE41_RS14780at 3022.993 kb on + strand, within ABIE41_RS14785at 3022.994 kb on - strand, within ABIE41_RS14785at 3022.994 kb on - strand, within ABIE41_RS14785at 3023.033 kb on - strand, within ABIE41_RS14785at 3023.089 kb on + strand, within ABIE41_RS14785at 3023.089 kb on + strand, within ABIE41_RS14785at 3023.090 kb on - strand, within ABIE41_RS14785at 3023.090 kb on - strand, within ABIE41_RS14785at 3023.537 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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3,020,663 + ABIE41_RS14775 0.31 -0.7
3,020,664 - ABIE41_RS14775 0.31 -0.5
3,020,664 - ABIE41_RS14775 0.31 +1.7
3,020,664 - ABIE41_RS14775 0.31 +0.1
3,020,733 - ABIE41_RS14775 0.36 +0.6
3,020,733 - ABIE41_RS14775 0.36 -0.0
3,021,126 - ABIE41_RS14775 0.70 -0.5
3,021,126 - ABIE41_RS14775 0.70 -0.4
3,021,294 + ABIE41_RS14775 0.84 -0.3
3,021,294 + ABIE41_RS14775 0.84 -2.9
3,021,295 - ABIE41_RS14775 0.84 +1.8
3,021,295 - ABIE41_RS14775 0.84 -0.8
3,021,531 - -0.2
3,021,532 + +0.4
3,021,533 - +0.3
3,021,802 - ABIE41_RS14780 0.19 +1.6
3,021,802 - ABIE41_RS14780 0.19 +0.3
3,021,802 - ABIE41_RS14780 0.19 +0.7
3,021,804 - ABIE41_RS14780 0.19 -0.5
3,022,993 + ABIE41_RS14785 0.32 +0.1
3,022,994 - ABIE41_RS14785 0.32 +0.2
3,022,994 - ABIE41_RS14785 0.32 +0.3
3,023,033 - ABIE41_RS14785 0.36 -0.1
3,023,089 + ABIE41_RS14785 0.42 -0.1
3,023,089 + ABIE41_RS14785 0.42 +0.5
3,023,090 - ABIE41_RS14785 0.42 +2.0
3,023,090 - ABIE41_RS14785 0.42 -0.3
3,023,537 - -0.6

Or see this region's nucleotide sequence