Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS11895 and ABIE41_RS11900 overlap by 62 nucleotides ABIE41_RS11900 and ABIE41_RS11905 are separated by 97 nucleotides ABIE41_RS11905 and ABIE41_RS11910 are separated by 100 nucleotides
ABIE41_RS11895: ABIE41_RS11895 - Lrp/AsnC family transcriptional regulator, at 2,432,164 to 2,432,628
_RS11895
ABIE41_RS11900: ABIE41_RS11900 - GNAT family N-acetyltransferase, at 2,432,567 to 2,433,088
_RS11900
ABIE41_RS11905: ABIE41_RS11905 - transcription elongation factor GreA, at 2,433,186 to 2,433,662
_RS11905
ABIE41_RS11910: ABIE41_RS11910 - carbamoyl-phosphate synthase large subunit, at 2,433,763 to 2,437,125
_RS11910
Position (kb)
2433
2434 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2432.687 kb on + strand, within ABIE41_RS11900 at 2432.688 kb on - strand, within ABIE41_RS11900 at 2432.898 kb on + strand, within ABIE41_RS11900 at 2432.898 kb on + strand, within ABIE41_RS11900 at 2432.898 kb on + strand, within ABIE41_RS11900 at 2432.899 kb on - strand, within ABIE41_RS11900 at 2432.967 kb on - strand, within ABIE41_RS11900 at 2433.018 kb on - strand, within ABIE41_RS11900 at 2433.018 kb on - strand, within ABIE41_RS11900 at 2433.127 kb on - strand at 2433.349 kb on + strand, within ABIE41_RS11905 at 2433.350 kb on - strand, within ABIE41_RS11905 at 2433.740 kb on - strand at 2433.740 kb on - strand at 2433.782 kb on + strand at 2433.782 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 2,432,687 + ABIE41_RS11900 0.23 -0.4 2,432,688 - ABIE41_RS11900 0.23 -2.0 2,432,898 + ABIE41_RS11900 0.63 -2.8 2,432,898 + ABIE41_RS11900 0.63 +0.2 2,432,898 + ABIE41_RS11900 0.63 -1.0 2,432,899 - ABIE41_RS11900 0.64 +0.2 2,432,967 - ABIE41_RS11900 0.77 -2.2 2,433,018 - ABIE41_RS11900 0.86 -0.5 2,433,018 - ABIE41_RS11900 0.86 +0.5 2,433,127 - +1.4 2,433,349 + ABIE41_RS11905 0.34 -2.5 2,433,350 - ABIE41_RS11905 0.34 -0.7 2,433,740 - -0.5 2,433,740 - +0.5 2,433,782 + -3.7 2,433,782 + -1.3
Or see this region's nucleotide sequence