Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS11885 and ABIE41_RS11890 are separated by 71 nucleotides ABIE41_RS11890 and ABIE41_RS11895 are separated by 99 nucleotides ABIE41_RS11895 and ABIE41_RS11900 overlap by 62 nucleotides
ABIE41_RS11885: ABIE41_RS11885 - thioredoxin-disulfide reductase, at 2,430,044 to 2,431,009
_RS11885
ABIE41_RS11890: ABIE41_RS11890 - mitochondrial fission ELM1 family protein, at 2,431,081 to 2,432,064
_RS11890
ABIE41_RS11895: ABIE41_RS11895 - Lrp/AsnC family transcriptional regulator, at 2,432,164 to 2,432,628
_RS11895
ABIE41_RS11900: ABIE41_RS11900 - GNAT family N-acetyltransferase, at 2,432,567 to 2,433,088
_RS11900
Position (kb)
2431
2432
2433 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2431.040 kb on - strand at 2431.110 kb on + strand at 2432.113 kb on - strand at 2432.132 kb on + strand at 2432.133 kb on - strand at 2432.687 kb on + strand, within ABIE41_RS11900 at 2432.688 kb on - strand, within ABIE41_RS11900 at 2432.898 kb on + strand, within ABIE41_RS11900 at 2432.898 kb on + strand, within ABIE41_RS11900 at 2432.898 kb on + strand, within ABIE41_RS11900 at 2432.899 kb on - strand, within ABIE41_RS11900 at 2432.967 kb on - strand, within ABIE41_RS11900 at 2433.018 kb on - strand, within ABIE41_RS11900 at 2433.018 kb on - strand, within ABIE41_RS11900
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 2,431,040 - +2.0 2,431,110 + +1.0 2,432,113 - -0.9 2,432,132 + -0.5 2,432,133 - +0.4 2,432,687 + ABIE41_RS11900 0.23 -0.4 2,432,688 - ABIE41_RS11900 0.23 -2.0 2,432,898 + ABIE41_RS11900 0.63 -2.8 2,432,898 + ABIE41_RS11900 0.63 +0.2 2,432,898 + ABIE41_RS11900 0.63 -1.0 2,432,899 - ABIE41_RS11900 0.64 +0.2 2,432,967 - ABIE41_RS11900 0.77 -2.2 2,433,018 - ABIE41_RS11900 0.86 -0.5 2,433,018 - ABIE41_RS11900 0.86 +0.5
Or see this region's nucleotide sequence