Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25140 and ABID97_RS25145 are separated by 141 nucleotides ABID97_RS25145 and ABID97_RS25150 are separated by 6 nucleotides ABID97_RS25150 and ABID97_RS25155 are separated by 95 nucleotides
ABID97_RS25140: ABID97_RS25140 - isovaleryl-CoA dehydrogenase, at 5,208,450 to 5,209,622
_RS25140
ABID97_RS25145: ABID97_RS25145 - AraC family transcriptional regulator, at 5,209,764 to 5,210,792
_RS25145
ABID97_RS25150: ABID97_RS25150 - thioredoxin family protein, at 5,210,799 to 5,211,128
_RS25150
ABID97_RS25155: ABID97_RS25155 - HAD family phosphatase, at 5,211,224 to 5,211,916
_RS25155
Position (kb) 5209
5210
5211 Strain fitness (log2 ratio) -1
0
1 at 5208.979 kb on + strand, within ABID97_RS25140 at 5208.979 kb on + strand, within ABID97_RS25140 at 5208.980 kb on - strand, within ABID97_RS25140 at 5209.102 kb on + strand, within ABID97_RS25140 at 5209.102 kb on + strand, within ABID97_RS25140 at 5209.102 kb on + strand, within ABID97_RS25140 at 5209.103 kb on - strand, within ABID97_RS25140 at 5209.165 kb on + strand, within ABID97_RS25140 at 5209.168 kb on + strand, within ABID97_RS25140 at 5209.168 kb on + strand, within ABID97_RS25140 at 5209.169 kb on - strand, within ABID97_RS25140 at 5209.279 kb on + strand, within ABID97_RS25140 at 5209.279 kb on + strand, within ABID97_RS25140 at 5209.280 kb on - strand, within ABID97_RS25140 at 5209.280 kb on - strand, within ABID97_RS25140 at 5209.695 kb on + strand at 5209.696 kb on - strand at 5209.696 kb on - strand at 5209.820 kb on - strand at 5209.840 kb on - strand at 5209.840 kb on - strand at 5209.849 kb on - strand at 5209.849 kb on - strand at 5210.022 kb on + strand, within ABID97_RS25145 at 5210.235 kb on + strand, within ABID97_RS25145 at 5210.235 kb on + strand, within ABID97_RS25145 at 5210.386 kb on - strand, within ABID97_RS25145 at 5210.386 kb on - strand, within ABID97_RS25145 at 5210.790 kb on + strand at 5210.986 kb on + strand, within ABID97_RS25150 at 5210.987 kb on - strand, within ABID97_RS25150 at 5211.348 kb on + strand, within ABID97_RS25155 at 5211.348 kb on + strand, within ABID97_RS25155 at 5211.459 kb on + strand, within ABID97_RS25155 at 5211.459 kb on + strand, within ABID97_RS25155 at 5211.459 kb on + strand, within ABID97_RS25155 at 5211.459 kb on + strand, within ABID97_RS25155 at 5211.459 kb on + strand, within ABID97_RS25155 at 5211.460 kb on - strand, within ABID97_RS25155 at 5211.460 kb on - strand, within ABID97_RS25155 at 5211.460 kb on - strand, within ABID97_RS25155
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 5,208,979 + ABID97_RS25140 0.45 -0.9 5,208,979 + ABID97_RS25140 0.45 -0.7 5,208,980 - ABID97_RS25140 0.45 +1.2 5,209,102 + ABID97_RS25140 0.56 -1.2 5,209,102 + ABID97_RS25140 0.56 -0.2 5,209,102 + ABID97_RS25140 0.56 -0.0 5,209,103 - ABID97_RS25140 0.56 -0.0 5,209,165 + ABID97_RS25140 0.61 -0.1 5,209,168 + ABID97_RS25140 0.61 -0.2 5,209,168 + ABID97_RS25140 0.61 -0.9 5,209,169 - ABID97_RS25140 0.61 -0.5 5,209,279 + ABID97_RS25140 0.71 -0.5 5,209,279 + ABID97_RS25140 0.71 -0.9 5,209,280 - ABID97_RS25140 0.71 +0.0 5,209,280 - ABID97_RS25140 0.71 -0.6 5,209,695 + +0.4 5,209,696 - -0.1 5,209,696 - +0.2 5,209,820 - +1.0 5,209,840 - -0.1 5,209,840 - -0.5 5,209,849 - +0.0 5,209,849 - -0.4 5,210,022 + ABID97_RS25145 0.25 -0.1 5,210,235 + ABID97_RS25145 0.46 -0.3 5,210,235 + ABID97_RS25145 0.46 -0.7 5,210,386 - ABID97_RS25145 0.60 +0.0 5,210,386 - ABID97_RS25145 0.60 -0.9 5,210,790 + +0.2 5,210,986 + ABID97_RS25150 0.57 +0.2 5,210,987 - ABID97_RS25150 0.57 +1.4 5,211,348 + ABID97_RS25155 0.18 -0.1 5,211,348 + ABID97_RS25155 0.18 -0.2 5,211,459 + ABID97_RS25155 0.34 -0.2 5,211,459 + ABID97_RS25155 0.34 -0.6 5,211,459 + ABID97_RS25155 0.34 +0.2 5,211,459 + ABID97_RS25155 0.34 +0.3 5,211,459 + ABID97_RS25155 0.34 -0.8 5,211,460 - ABID97_RS25155 0.34 -0.3 5,211,460 - ABID97_RS25155 0.34 -0.2 5,211,460 - ABID97_RS25155 0.34 +1.4
Or see this region's nucleotide sequence