Strain Fitness in Variovorax sp. OAS795 around ABID97_RS24970

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS24965 and ABID97_RS24970 are separated by 71 nucleotidesABID97_RS24970 and ABID97_RS24975 are separated by 18 nucleotides ABID97_RS24965: ABID97_RS24965 - peptidoglycan DD-metalloendopeptidase family protein, at 5,168,554 to 5,169,897 _RS24965 ABID97_RS24970: ABID97_RS24970 - anhydro-N-acetylmuramic acid kinase, at 5,169,969 to 5,171,099 _RS24970 ABID97_RS24975: ABID97_RS24975 - multidrug transporter subunit MdtD, at 5,171,118 to 5,172,548 _RS24975 Position (kb) 5169 5170 5171 5172Strain fitness (log2 ratio) -1 0 1 2at 5169.242 kb on - strand, within ABID97_RS24965at 5169.367 kb on + strand, within ABID97_RS24965at 5169.367 kb on + strand, within ABID97_RS24965at 5169.367 kb on + strand, within ABID97_RS24965at 5169.367 kb on + strand, within ABID97_RS24965at 5169.368 kb on - strand, within ABID97_RS24965at 5169.370 kb on + strand, within ABID97_RS24965at 5169.403 kb on + strand, within ABID97_RS24965at 5169.403 kb on + strand, within ABID97_RS24965at 5169.403 kb on + strand, within ABID97_RS24965at 5169.403 kb on + strand, within ABID97_RS24965at 5169.404 kb on - strand, within ABID97_RS24965at 5169.404 kb on - strand, within ABID97_RS24965at 5169.404 kb on - strand, within ABID97_RS24965at 5169.626 kb on - strand, within ABID97_RS24965at 5169.626 kb on - strand, within ABID97_RS24965at 5169.757 kb on + strand, within ABID97_RS24965at 5169.757 kb on + strand, within ABID97_RS24965at 5169.758 kb on - strand, within ABID97_RS24965at 5170.188 kb on + strand, within ABID97_RS24970at 5170.188 kb on + strand, within ABID97_RS24970at 5170.188 kb on + strand, within ABID97_RS24970at 5170.188 kb on + strand, within ABID97_RS24970at 5170.189 kb on - strand, within ABID97_RS24970at 5170.189 kb on - strand, within ABID97_RS24970at 5170.189 kb on - strand, within ABID97_RS24970at 5170.189 kb on - strand, within ABID97_RS24970at 5170.308 kb on + strand, within ABID97_RS24970at 5170.308 kb on + strand, within ABID97_RS24970at 5170.686 kb on + strand, within ABID97_RS24970at 5170.686 kb on + strand, within ABID97_RS24970at 5170.687 kb on - strand, within ABID97_RS24970at 5171.288 kb on - strand, within ABID97_RS24975at 5171.288 kb on - strand, within ABID97_RS24975at 5171.557 kb on + strand, within ABID97_RS24975at 5171.653 kb on + strand, within ABID97_RS24975at 5171.935 kb on + strand, within ABID97_RS24975at 5171.936 kb on - strand, within ABID97_RS24975at 5172.058 kb on + strand, within ABID97_RS24975at 5172.059 kb on - strand, within ABID97_RS24975at 5172.059 kb on - strand, within ABID97_RS24975at 5172.059 kb on - strand, within ABID97_RS24975at 5172.059 kb on - strand, within ABID97_RS24975

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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5,169,242 - ABID97_RS24965 0.51 +0.5
5,169,367 + ABID97_RS24965 0.60 +0.8
5,169,367 + ABID97_RS24965 0.60 -1.1
5,169,367 + ABID97_RS24965 0.60 +0.0
5,169,367 + ABID97_RS24965 0.60 +0.3
5,169,368 - ABID97_RS24965 0.61 -0.4
5,169,370 + ABID97_RS24965 0.61 +0.2
5,169,403 + ABID97_RS24965 0.63 -0.0
5,169,403 + ABID97_RS24965 0.63 +0.3
5,169,403 + ABID97_RS24965 0.63 +0.3
5,169,403 + ABID97_RS24965 0.63 +0.2
5,169,404 - ABID97_RS24965 0.63 +0.3
5,169,404 - ABID97_RS24965 0.63 +1.9
5,169,404 - ABID97_RS24965 0.63 -0.3
5,169,626 - ABID97_RS24965 0.80 +0.4
5,169,626 - ABID97_RS24965 0.80 +1.0
5,169,757 + ABID97_RS24965 0.90 +0.1
5,169,757 + ABID97_RS24965 0.90 -0.9
5,169,758 - ABID97_RS24965 0.90 +0.6
5,170,188 + ABID97_RS24970 0.19 +0.3
5,170,188 + ABID97_RS24970 0.19 +0.2
5,170,188 + ABID97_RS24970 0.19 -0.0
5,170,188 + ABID97_RS24970 0.19 -0.8
5,170,189 - ABID97_RS24970 0.19 +0.2
5,170,189 - ABID97_RS24970 0.19 +0.3
5,170,189 - ABID97_RS24970 0.19 +0.2
5,170,189 - ABID97_RS24970 0.19 +0.2
5,170,308 + ABID97_RS24970 0.30 +0.5
5,170,308 + ABID97_RS24970 0.30 +0.7
5,170,686 + ABID97_RS24970 0.63 +0.2
5,170,686 + ABID97_RS24970 0.63 +0.3
5,170,687 - ABID97_RS24970 0.63 -0.2
5,171,288 - ABID97_RS24975 0.12 +0.0
5,171,288 - ABID97_RS24975 0.12 -0.1
5,171,557 + ABID97_RS24975 0.31 +0.4
5,171,653 + ABID97_RS24975 0.37 +0.1
5,171,935 + ABID97_RS24975 0.57 +0.3
5,171,936 - ABID97_RS24975 0.57 +0.2
5,172,058 + ABID97_RS24975 0.66 -0.6
5,172,059 - ABID97_RS24975 0.66 -0.4
5,172,059 - ABID97_RS24975 0.66 +0.1
5,172,059 - ABID97_RS24975 0.66 +0.0
5,172,059 - ABID97_RS24975 0.66 +0.1

Or see this region's nucleotide sequence