Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22245

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22240 and ABID97_RS22245 are separated by 60 nucleotidesABID97_RS22245 and ABID97_RS22250 are separated by 226 nucleotides ABID97_RS22240: ABID97_RS22240 - LysR family transcriptional regulator, at 4,608,425 to 4,609,345 _RS22240 ABID97_RS22245: ABID97_RS22245 - SET domain-containing protein-lysine N-methyltransferase, at 4,609,406 to 4,609,876 _RS22245 ABID97_RS22250: ABID97_RS22250 - NCS1 family nucleobase:cation symporter-1, at 4,610,103 to 4,611,596 _RS22250 Position (kb) 4609 4610Strain fitness (log2 ratio) -1 0 1at 4608.617 kb on + strand, within ABID97_RS22240at 4608.617 kb on + strand, within ABID97_RS22240at 4608.617 kb on + strand, within ABID97_RS22240at 4608.618 kb on - strand, within ABID97_RS22240at 4608.618 kb on - strand, within ABID97_RS22240at 4608.618 kb on - strand, within ABID97_RS22240at 4608.984 kb on - strand, within ABID97_RS22240at 4609.133 kb on + strand, within ABID97_RS22240at 4609.221 kb on - strand, within ABID97_RS22240at 4609.524 kb on - strand, within ABID97_RS22245at 4609.854 kb on + strandat 4609.854 kb on + strandat 4609.855 kb on - strandat 4609.855 kb on - strandat 4609.977 kb on + strandat 4609.978 kb on - strandat 4609.980 kb on - strandat 4610.254 kb on - strand, within ABID97_RS22250at 4610.535 kb on + strand, within ABID97_RS22250at 4610.536 kb on - strand, within ABID97_RS22250at 4610.595 kb on + strand, within ABID97_RS22250at 4610.742 kb on + strand, within ABID97_RS22250at 4610.743 kb on - strand, within ABID97_RS22250

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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4,608,617 + ABID97_RS22240 0.21 +0.1
4,608,617 + ABID97_RS22240 0.21 +0.1
4,608,617 + ABID97_RS22240 0.21 -0.2
4,608,618 - ABID97_RS22240 0.21 +0.3
4,608,618 - ABID97_RS22240 0.21 +0.5
4,608,618 - ABID97_RS22240 0.21 +0.1
4,608,984 - ABID97_RS22240 0.61 -0.3
4,609,133 + ABID97_RS22240 0.77 +0.1
4,609,221 - ABID97_RS22240 0.86 -0.2
4,609,524 - ABID97_RS22245 0.25 +0.2
4,609,854 + -0.8
4,609,854 + +0.6
4,609,855 - +0.2
4,609,855 - -0.6
4,609,977 + -0.3
4,609,978 - -0.3
4,609,980 - -0.1
4,610,254 - ABID97_RS22250 0.10 +0.4
4,610,535 + ABID97_RS22250 0.29 -0.2
4,610,536 - ABID97_RS22250 0.29 +0.1
4,610,595 + ABID97_RS22250 0.33 -0.5
4,610,742 + ABID97_RS22250 0.43 -0.2
4,610,743 - ABID97_RS22250 0.43 +0.0

Or see this region's nucleotide sequence