Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20230 and ABID97_RS20235 are separated by 5 nucleotides ABID97_RS20235 and ABID97_RS20240 are separated by 37 nucleotides ABID97_RS20240 and ABID97_RS20245 are separated by 100 nucleotides ABID97_RS20245 and ABID97_RS20250 are separated by 43 nucleotides
ABID97_RS20230: ABID97_RS20230 - ferritin-like domain-containing protein, at 4,176,896 to 4,177,711
_RS20230
ABID97_RS20235: ABID97_RS20235 - MaoC family dehydratase, at 4,177,717 to 4,178,193
_RS20235
ABID97_RS20240: ABID97_RS20240 - thiolase family protein, at 4,178,231 to 4,179,364
_RS20240
ABID97_RS20245: ABID97_RS20245 - TetR/AcrR family transcriptional regulator, at 4,179,465 to 4,180,052
_RS20245
ABID97_RS20250: ABID97_RS20250 - tripartite tricarboxylate transporter substrate binding protein, at 4,180,096 to 4,181,070
_RS20250
Position (kb) 4178
4179
4180 Strain fitness (log2 ratio) -1
0
1 at 4177.301 kb on + strand, within ABID97_RS20230 at 4177.583 kb on + strand, within ABID97_RS20230 at 4177.584 kb on - strand, within ABID97_RS20230 at 4177.757 kb on + strand at 4177.757 kb on + strand at 4178.151 kb on - strand at 4178.939 kb on - strand, within ABID97_RS20240 at 4178.939 kb on - strand, within ABID97_RS20240 at 4178.940 kb on + strand, within ABID97_RS20240 at 4178.940 kb on + strand, within ABID97_RS20240 at 4178.940 kb on + strand, within ABID97_RS20240 at 4178.940 kb on + strand, within ABID97_RS20240 at 4178.940 kb on + strand, within ABID97_RS20240 at 4178.941 kb on - strand, within ABID97_RS20240 at 4178.941 kb on - strand, within ABID97_RS20240 at 4178.941 kb on - strand, within ABID97_RS20240 at 4178.941 kb on - strand, within ABID97_RS20240 at 4178.941 kb on - strand, within ABID97_RS20240 at 4178.941 kb on - strand, within ABID97_RS20240 at 4179.766 kb on + strand, within ABID97_RS20245 at 4179.778 kb on + strand, within ABID97_RS20245 at 4179.778 kb on + strand, within ABID97_RS20245 at 4179.778 kb on + strand, within ABID97_RS20245 at 4179.803 kb on + strand, within ABID97_RS20245 at 4179.804 kb on - strand, within ABID97_RS20245 at 4179.955 kb on + strand, within ABID97_RS20245 at 4179.955 kb on + strand, within ABID97_RS20245 at 4179.956 kb on - strand, within ABID97_RS20245 at 4180.265 kb on + strand, within ABID97_RS20250 at 4180.265 kb on + strand, within ABID97_RS20250 at 4180.266 kb on - strand, within ABID97_RS20250
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 4,177,301 + ABID97_RS20230 0.50 -0.2 4,177,583 + ABID97_RS20230 0.84 +0.4 4,177,584 - ABID97_RS20230 0.84 +0.9 4,177,757 + -0.5 4,177,757 + +0.5 4,178,151 - +1.3 4,178,939 - ABID97_RS20240 0.62 -0.3 4,178,939 - ABID97_RS20240 0.62 -0.5 4,178,940 + ABID97_RS20240 0.63 +0.5 4,178,940 + ABID97_RS20240 0.63 -0.1 4,178,940 + ABID97_RS20240 0.63 +0.0 4,178,940 + ABID97_RS20240 0.63 +0.1 4,178,940 + ABID97_RS20240 0.63 +0.4 4,178,941 - ABID97_RS20240 0.63 -1.1 4,178,941 - ABID97_RS20240 0.63 +0.1 4,178,941 - ABID97_RS20240 0.63 +1.7 4,178,941 - ABID97_RS20240 0.63 -0.4 4,178,941 - ABID97_RS20240 0.63 -0.6 4,178,941 - ABID97_RS20240 0.63 +0.0 4,179,766 + ABID97_RS20245 0.51 -0.0 4,179,778 + ABID97_RS20245 0.53 -1.4 4,179,778 + ABID97_RS20245 0.53 -0.1 4,179,778 + ABID97_RS20245 0.53 -0.2 4,179,803 + ABID97_RS20245 0.57 -0.3 4,179,804 - ABID97_RS20245 0.58 +0.0 4,179,955 + ABID97_RS20245 0.83 -1.3 4,179,955 + ABID97_RS20245 0.83 -0.2 4,179,956 - ABID97_RS20245 0.84 -0.5 4,180,265 + ABID97_RS20250 0.17 +0.7 4,180,265 + ABID97_RS20250 0.17 +0.3 4,180,266 - ABID97_RS20250 0.17 -0.0
Or see this region's nucleotide sequence