Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18685 and ABID97_RS18690 are separated by 274 nucleotides ABID97_RS18690 and ABID97_RS18695 overlap by 4 nucleotides ABID97_RS18695 and ABID97_RS18700 are separated by 195 nucleotides ABID97_RS18700 and ABID97_RS18705 are separated by 107 nucleotides
ABID97_RS18685: ABID97_RS18685 - tripartite tricarboxylate transporter substrate binding protein, at 3,850,455 to 3,851,414
_RS18685
ABID97_RS18690: ABID97_RS18690 - hypothetical protein, at 3,851,689 to 3,851,865
_RS18690
ABID97_RS18695: ABID97_RS18695 - hypothetical protein, at 3,851,862 to 3,852,029
_RS18695
ABID97_RS18700: ABID97_RS18700 - LysR substrate-binding domain-containing protein, at 3,852,225 to 3,853,157
_RS18700
ABID97_RS18705: ABID97_RS18705 - acyl-CoA dehydrogenase family protein, at 3,853,265 to 3,854,437
_RS18705
Position (kb) 3852
3853
3854 Strain fitness (log2 ratio) -1
0
1 at 3851.250 kb on + strand, within ABID97_RS18685 at 3851.458 kb on + strand at 3851.580 kb on + strand at 3851.684 kb on + strand at 3851.685 kb on - strand at 3851.753 kb on - strand, within ABID97_RS18690 at 3852.209 kb on - strand at 3852.209 kb on - strand at 3852.719 kb on - strand, within ABID97_RS18700 at 3852.924 kb on - strand, within ABID97_RS18700 at 3853.352 kb on + strand at 3853.544 kb on + strand, within ABID97_RS18705 at 3853.545 kb on - strand, within ABID97_RS18705 at 3853.545 kb on - strand, within ABID97_RS18705 at 3853.840 kb on - strand, within ABID97_RS18705 at 3853.840 kb on - strand, within ABID97_RS18705 at 3853.918 kb on - strand, within ABID97_RS18705 at 3853.998 kb on + strand, within ABID97_RS18705 at 3854.073 kb on - strand, within ABID97_RS18705
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 3,851,250 + ABID97_RS18685 0.83 +0.7 3,851,458 + +0.2 3,851,580 + +0.1 3,851,684 + -0.0 3,851,685 - -1.3 3,851,753 - ABID97_RS18690 0.36 -0.5 3,852,209 - -0.4 3,852,209 - +0.9 3,852,719 - ABID97_RS18700 0.53 -1.7 3,852,924 - ABID97_RS18700 0.75 -0.0 3,853,352 + -0.2 3,853,544 + ABID97_RS18705 0.24 -0.8 3,853,545 - ABID97_RS18705 0.24 -1.0 3,853,545 - ABID97_RS18705 0.24 -1.1 3,853,840 - ABID97_RS18705 0.49 +0.1 3,853,840 - ABID97_RS18705 0.49 -0.0 3,853,918 - ABID97_RS18705 0.56 +0.7 3,853,998 + ABID97_RS18705 0.62 -0.1 3,854,073 - ABID97_RS18705 0.69 -0.2
Or see this region's nucleotide sequence