Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17610

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17605 and ABID97_RS17610 are separated by 26 nucleotidesABID97_RS17610 and ABID97_RS17615 are separated by 99 nucleotides ABID97_RS17605: ABID97_RS17605 - trigger factor, at 3,635,869 to 3,637,185 _RS17605 ABID97_RS17610: ABID97_RS17610 - tRNA-Leu, at 3,637,212 to 3,637,298 _RS17610 ABID97_RS17615: ABID97_RS17615 - efflux RND transporter permease subunit, at 3,637,398 to 3,640,553 _RS17615 Position (kb) 3637 3638Strain fitness (log2 ratio) -1 0 1 2at 3636.518 kb on + strand, within ABID97_RS17605at 3636.519 kb on - strand, within ABID97_RS17605at 3637.264 kb on - strand, within ABID97_RS17610at 3637.278 kb on + strand, within ABID97_RS17610at 3637.299 kb on + strandat 3637.400 kb on - strandat 3637.482 kb on + strandat 3637.483 kb on - strandat 3638.068 kb on + strand, within ABID97_RS17615at 3638.068 kb on + strand, within ABID97_RS17615at 3638.168 kb on - strand, within ABID97_RS17615at 3638.168 kb on - strand, within ABID97_RS17615

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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3,636,518 + ABID97_RS17605 0.49 +0.8
3,636,519 - ABID97_RS17605 0.49 -0.1
3,637,264 - ABID97_RS17610 0.60 +2.3
3,637,278 + ABID97_RS17610 0.76 +0.7
3,637,299 + +0.1
3,637,400 - +0.3
3,637,482 + -0.0
3,637,483 - +0.1
3,638,068 + ABID97_RS17615 0.21 +0.4
3,638,068 + ABID97_RS17615 0.21 -1.1
3,638,168 - ABID97_RS17615 0.24 -0.2
3,638,168 - ABID97_RS17615 0.24 +0.2

Or see this region's nucleotide sequence