Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16715 and ABID97_RS16720 overlap by 4 nucleotides ABID97_RS16720 and ABID97_RS16725 overlap by 1 nucleotides ABID97_RS16725 and ABID97_RS16730 overlap by 4 nucleotides ABID97_RS16730 and ABID97_RS16735 overlap by 1 nucleotides
ABID97_RS16715: ABID97_RS16715 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 3,459,688 to 3,460,155
_RS16715
ABID97_RS16720: ABID97_RS16720 - ribosome silencing factor, at 3,460,152 to 3,460,817
_RS16720
ABID97_RS16725: ABID97_RS16725 - nicotinate (nicotinamide) nucleotide adenylyltransferase, at 3,460,817 to 3,461,446
_RS16725
ABID97_RS16730: ABID97_RS16730 - oxygen-dependent coproporphyrinogen oxidase, at 3,461,443 to 3,462,360
_RS16730
ABID97_RS16735: ABID97_RS16735 - phosphoribosylamine--glycine ligase, at 3,462,360 to 3,463,658
_RS16735
Position (kb) 3460
3461
3462 Strain fitness (log2 ratio) -1
0
1
2 at 3460.001 kb on + strand, within ABID97_RS16715 at 3460.001 kb on + strand, within ABID97_RS16715 at 3460.002 kb on - strand, within ABID97_RS16715 at 3460.501 kb on + strand, within ABID97_RS16720 at 3460.501 kb on + strand, within ABID97_RS16720 at 3460.502 kb on - strand, within ABID97_RS16720 at 3460.502 kb on - strand, within ABID97_RS16720 at 3460.502 kb on - strand, within ABID97_RS16720 at 3460.502 kb on - strand, within ABID97_RS16720 at 3460.502 kb on - strand, within ABID97_RS16720 at 3460.504 kb on + strand, within ABID97_RS16720 at 3460.504 kb on + strand, within ABID97_RS16720 at 3460.505 kb on - strand, within ABID97_RS16720
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 3,460,001 + ABID97_RS16715 0.67 +0.6 3,460,001 + ABID97_RS16715 0.67 +0.3 3,460,002 - ABID97_RS16715 0.67 +1.7 3,460,501 + ABID97_RS16720 0.52 +2.6 3,460,501 + ABID97_RS16720 0.52 +0.3 3,460,502 - ABID97_RS16720 0.53 -0.3 3,460,502 - ABID97_RS16720 0.53 +0.2 3,460,502 - ABID97_RS16720 0.53 -0.3 3,460,502 - ABID97_RS16720 0.53 +0.4 3,460,502 - ABID97_RS16720 0.53 +2.1 3,460,504 + ABID97_RS16720 0.53 -0.2 3,460,504 + ABID97_RS16720 0.53 +0.3 3,460,505 - ABID97_RS16720 0.53 +1.6
Or see this region's nucleotide sequence