Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16160 and ABID97_RS16165 are separated by 245 nucleotides ABID97_RS16165 and ABID97_RS16170 overlap by 4 nucleotides ABID97_RS16170 and ABID97_RS16175 are separated by 103 nucleotides ABID97_RS16175 and ABID97_RS16180 are separated by 7 nucleotides
ABID97_RS16160: ABID97_RS16160 - fatty acid desaturase, at 3,344,969 to 3,346,153
_RS16160
ABID97_RS16165: ABID97_RS16165 - BON domain-containing protein, at 3,346,399 to 3,346,662
_RS16165
ABID97_RS16170: ABID97_RS16170 - phosphoketolase family protein, at 3,346,659 to 3,349,016
_RS16170
ABID97_RS16175: ABID97_RS16175 - response regulator transcription factor, at 3,349,120 to 3,349,860
_RS16175
ABID97_RS16180: ABID97_RS16180 - PAS domain S-box protein, at 3,349,868 to 3,351,961
_RS16180
Position (kb) 3346
3347
3348
3349
3350 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3345.756 kb on + strand, within ABID97_RS16160 at 3345.837 kb on + strand, within ABID97_RS16160 at 3346.313 kb on + strand at 3346.842 kb on + strand at 3346.843 kb on - strand at 3346.843 kb on - strand at 3346.953 kb on + strand, within ABID97_RS16170 at 3346.953 kb on + strand, within ABID97_RS16170 at 3346.954 kb on - strand, within ABID97_RS16170 at 3346.954 kb on - strand, within ABID97_RS16170 at 3346.966 kb on - strand, within ABID97_RS16170 at 3347.095 kb on - strand, within ABID97_RS16170 at 3347.112 kb on + strand, within ABID97_RS16170 at 3347.344 kb on - strand, within ABID97_RS16170 at 3348.207 kb on + strand, within ABID97_RS16170 at 3348.207 kb on + strand, within ABID97_RS16170 at 3348.753 kb on + strand, within ABID97_RS16170 at 3348.754 kb on - strand, within ABID97_RS16170 at 3348.754 kb on - strand, within ABID97_RS16170 at 3348.792 kb on + strand at 3348.893 kb on + strand at 3348.957 kb on + strand at 3348.957 kb on + strand at 3348.957 kb on + strand at 3349.187 kb on - strand at 3349.187 kb on - strand at 3349.420 kb on + strand, within ABID97_RS16175 at 3349.420 kb on + strand, within ABID97_RS16175 at 3349.421 kb on - strand, within ABID97_RS16175 at 3349.828 kb on + strand at 3349.828 kb on + strand at 3349.828 kb on + strand at 3349.828 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 3,345,756 + ABID97_RS16160 0.66 +0.5 3,345,837 + ABID97_RS16160 0.73 -0.1 3,346,313 + +0.5 3,346,842 + -0.4 3,346,843 - +0.1 3,346,843 - -0.3 3,346,953 + ABID97_RS16170 0.12 +0.9 3,346,953 + ABID97_RS16170 0.12 +0.3 3,346,954 - ABID97_RS16170 0.13 +1.7 3,346,954 - ABID97_RS16170 0.13 -0.9 3,346,966 - ABID97_RS16170 0.13 +0.9 3,347,095 - ABID97_RS16170 0.18 +0.0 3,347,112 + ABID97_RS16170 0.19 +0.3 3,347,344 - ABID97_RS16170 0.29 +0.7 3,348,207 + ABID97_RS16170 0.66 +0.3 3,348,207 + ABID97_RS16170 0.66 +0.2 3,348,753 + ABID97_RS16170 0.89 +0.6 3,348,754 - ABID97_RS16170 0.89 -0.2 3,348,754 - ABID97_RS16170 0.89 -0.4 3,348,792 + +0.3 3,348,893 + +0.2 3,348,957 + -0.4 3,348,957 + -0.4 3,348,957 + +0.1 3,349,187 - -0.1 3,349,187 - -0.2 3,349,420 + ABID97_RS16175 0.40 -0.0 3,349,420 + ABID97_RS16175 0.40 -2.4 3,349,421 - ABID97_RS16175 0.41 +2.1 3,349,828 + +0.5 3,349,828 + -1.2 3,349,828 + +0.2 3,349,828 + -0.9
Or see this region's nucleotide sequence