Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS14845 and ABID97_RS14850 overlap by 4 nucleotides ABID97_RS14850 and ABID97_RS14855 are separated by 24 nucleotides ABID97_RS14855 and ABID97_RS14860 are separated by 31 nucleotides ABID97_RS14860 and ABID97_RS14865 overlap by 4 nucleotides ABID97_RS14865 and ABID97_RS14870 are separated by 12 nucleotides
ABID97_RS14845: ABID97_RS14845 - hypothetical protein, at 3,086,579 to 3,086,917
_RS14845
ABID97_RS14850: ABID97_RS14850 - P-II family nitrogen regulator, at 3,086,914 to 3,087,252
_RS14850
ABID97_RS14855: ABID97_RS14855 - TIGR00730 family Rossman fold protein, at 3,087,277 to 3,087,867
_RS14855
ABID97_RS14860: ABID97_RS14860 - diacylglycerol kinase, at 3,087,899 to 3,088,306
_RS14860
ABID97_RS14865: ABID97_RS14865 - RDD family protein, at 3,088,303 to 3,088,869
_RS14865
ABID97_RS14870: ABID97_RS14870 - DUF3106 domain-containing protein, at 3,088,882 to 3,089,649
_RS14870
Position (kb)
3087
3088
3089 Strain fitness (log2 ratio)
-1
0
1 at 3086.909 kb on - strand at 3087.064 kb on + strand, within ABID97_RS14850 at 3087.065 kb on - strand, within ABID97_RS14850 at 3087.065 kb on - strand, within ABID97_RS14850 at 3087.415 kb on - strand, within ABID97_RS14855 at 3087.443 kb on + strand, within ABID97_RS14855 at 3087.443 kb on + strand, within ABID97_RS14855 at 3087.443 kb on + strand, within ABID97_RS14855 at 3087.444 kb on - strand, within ABID97_RS14855 at 3087.444 kb on - strand, within ABID97_RS14855 at 3087.446 kb on + strand, within ABID97_RS14855 at 3087.840 kb on - strand at 3088.506 kb on - strand, within ABID97_RS14865 at 3088.506 kb on - strand, within ABID97_RS14865 at 3088.616 kb on + strand, within ABID97_RS14865 at 3088.617 kb on - strand, within ABID97_RS14865 at 3088.748 kb on + strand, within ABID97_RS14865 at 3088.749 kb on - strand, within ABID97_RS14865 at 3089.277 kb on - strand, within ABID97_RS14870 at 3089.277 kb on - strand, within ABID97_RS14870 at 3089.277 kb on - strand, within ABID97_RS14870
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 3,086,909 - -1.0 3,087,064 + ABID97_RS14850 0.44 -1.1 3,087,065 - ABID97_RS14850 0.45 -0.9 3,087,065 - ABID97_RS14850 0.45 -0.9 3,087,415 - ABID97_RS14855 0.23 +1.2 3,087,443 + ABID97_RS14855 0.28 -0.0 3,087,443 + ABID97_RS14855 0.28 +0.4 3,087,443 + ABID97_RS14855 0.28 +0.3 3,087,444 - ABID97_RS14855 0.28 +0.4 3,087,444 - ABID97_RS14855 0.28 -0.3 3,087,446 + ABID97_RS14855 0.29 +0.6 3,087,840 - -0.1 3,088,506 - ABID97_RS14865 0.36 -0.2 3,088,506 - ABID97_RS14865 0.36 +1.4 3,088,616 + ABID97_RS14865 0.55 -0.6 3,088,617 - ABID97_RS14865 0.55 +0.8 3,088,748 + ABID97_RS14865 0.78 +0.3 3,088,749 - ABID97_RS14865 0.79 +0.5 3,089,277 - ABID97_RS14870 0.51 +1.3 3,089,277 - ABID97_RS14870 0.51 +1.2 3,089,277 - ABID97_RS14870 0.51 +1.5
Or see this region's nucleotide sequence