Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14860

Experiment: L-Proline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS14845 and ABID97_RS14850 overlap by 4 nucleotidesABID97_RS14850 and ABID97_RS14855 are separated by 24 nucleotidesABID97_RS14855 and ABID97_RS14860 are separated by 31 nucleotidesABID97_RS14860 and ABID97_RS14865 overlap by 4 nucleotidesABID97_RS14865 and ABID97_RS14870 are separated by 12 nucleotides ABID97_RS14845: ABID97_RS14845 - hypothetical protein, at 3,086,579 to 3,086,917 _RS14845 ABID97_RS14850: ABID97_RS14850 - P-II family nitrogen regulator, at 3,086,914 to 3,087,252 _RS14850 ABID97_RS14855: ABID97_RS14855 - TIGR00730 family Rossman fold protein, at 3,087,277 to 3,087,867 _RS14855 ABID97_RS14860: ABID97_RS14860 - diacylglycerol kinase, at 3,087,899 to 3,088,306 _RS14860 ABID97_RS14865: ABID97_RS14865 - RDD family protein, at 3,088,303 to 3,088,869 _RS14865 ABID97_RS14870: ABID97_RS14870 - DUF3106 domain-containing protein, at 3,088,882 to 3,089,649 _RS14870 Position (kb) 3087 3088 3089Strain fitness (log2 ratio) -1 0 1at 3086.909 kb on - strandat 3087.064 kb on + strand, within ABID97_RS14850at 3087.065 kb on - strand, within ABID97_RS14850at 3087.065 kb on - strand, within ABID97_RS14850at 3087.415 kb on - strand, within ABID97_RS14855at 3087.443 kb on + strand, within ABID97_RS14855at 3087.443 kb on + strand, within ABID97_RS14855at 3087.443 kb on + strand, within ABID97_RS14855at 3087.444 kb on - strand, within ABID97_RS14855at 3087.444 kb on - strand, within ABID97_RS14855at 3087.446 kb on + strand, within ABID97_RS14855at 3087.840 kb on - strandat 3088.506 kb on - strand, within ABID97_RS14865at 3088.506 kb on - strand, within ABID97_RS14865at 3088.616 kb on + strand, within ABID97_RS14865at 3088.617 kb on - strand, within ABID97_RS14865at 3088.748 kb on + strand, within ABID97_RS14865at 3088.749 kb on - strand, within ABID97_RS14865at 3089.277 kb on - strand, within ABID97_RS14870at 3089.277 kb on - strand, within ABID97_RS14870at 3089.277 kb on - strand, within ABID97_RS14870

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
remove
3,086,909 - -1.0
3,087,064 + ABID97_RS14850 0.44 -1.1
3,087,065 - ABID97_RS14850 0.45 -0.9
3,087,065 - ABID97_RS14850 0.45 -0.9
3,087,415 - ABID97_RS14855 0.23 +1.2
3,087,443 + ABID97_RS14855 0.28 -0.0
3,087,443 + ABID97_RS14855 0.28 +0.4
3,087,443 + ABID97_RS14855 0.28 +0.3
3,087,444 - ABID97_RS14855 0.28 +0.4
3,087,444 - ABID97_RS14855 0.28 -0.3
3,087,446 + ABID97_RS14855 0.29 +0.6
3,087,840 - -0.1
3,088,506 - ABID97_RS14865 0.36 -0.2
3,088,506 - ABID97_RS14865 0.36 +1.4
3,088,616 + ABID97_RS14865 0.55 -0.6
3,088,617 - ABID97_RS14865 0.55 +0.8
3,088,748 + ABID97_RS14865 0.78 +0.3
3,088,749 - ABID97_RS14865 0.79 +0.5
3,089,277 - ABID97_RS14870 0.51 +1.3
3,089,277 - ABID97_RS14870 0.51 +1.2
3,089,277 - ABID97_RS14870 0.51 +1.5

Or see this region's nucleotide sequence