Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12775 and ABID97_RS12780 are separated by 22 nucleotides ABID97_RS12780 and ABID97_RS12785 are separated by 32 nucleotides ABID97_RS12785 and ABID97_RS12790 are separated by 11 nucleotides
ABID97_RS12775: ABID97_RS12775 - YncE family protein, at 2,648,135 to 2,649,118
_RS12775
ABID97_RS12780: ABID97_RS12780 - hypothetical protein, at 2,649,141 to 2,649,512
_RS12780
ABID97_RS12785: ABID97_RS12785 - hypothetical protein, at 2,649,545 to 2,650,240
_RS12785
ABID97_RS12790: ABID97_RS12790 - substrate-binding domain-containing protein, at 2,650,252 to 2,651,142
_RS12790
Position (kb) 2649
2650 Strain fitness (log2 ratio) -2
-1
0
1 at 2648.265 kb on + strand, within ABID97_RS12775 at 2648.265 kb on + strand, within ABID97_RS12775 at 2648.386 kb on - strand, within ABID97_RS12775 at 2649.301 kb on + strand, within ABID97_RS12780 at 2649.409 kb on + strand, within ABID97_RS12780 at 2649.409 kb on + strand, within ABID97_RS12780 at 2649.643 kb on - strand, within ABID97_RS12785 at 2649.814 kb on - strand, within ABID97_RS12785 at 2650.298 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 2,648,265 + ABID97_RS12775 0.13 +0.0 2,648,265 + ABID97_RS12775 0.13 -0.8 2,648,386 - ABID97_RS12775 0.26 +0.1 2,649,301 + ABID97_RS12780 0.43 -0.5 2,649,409 + ABID97_RS12780 0.72 -1.2 2,649,409 + ABID97_RS12780 0.72 -0.4 2,649,643 - ABID97_RS12785 0.14 -2.6 2,649,814 - ABID97_RS12785 0.39 -1.8 2,650,298 + +1.2
Or see this region's nucleotide sequence