Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11800 and ABID97_RS11805 are separated by 178 nucleotides ABID97_RS11805 and ABID97_RS11810 are separated by 24 nucleotides ABID97_RS11810 and ABID97_RS11815 are separated by 255 nucleotides ABID97_RS11815 and ABID97_RS11820 are separated by 36 nucleotides
ABID97_RS11800: ABID97_RS11800 - Crp/Fnr family transcriptional regulator, at 2,439,287 to 2,440,003
_RS11800
ABID97_RS11805: ABID97_RS11805 - response regulator transcription factor, at 2,440,182 to 2,440,685
_RS11805
ABID97_RS11810: ABID97_RS11810 - hypothetical protein, at 2,440,710 to 2,440,952
_RS11810
ABID97_RS11815: ABID97_RS11815 - hypothetical protein, at 2,441,208 to 2,441,699
_RS11815
ABID97_RS11820: ABID97_RS11820 - SDR family oxidoreductase, at 2,441,736 to 2,443,076
_RS11820
Position (kb)
2440
2441 Strain fitness (log2 ratio)
-1
0
1 at 2439.782 kb on + strand, within ABID97_RS11800 at 2439.818 kb on + strand, within ABID97_RS11800 at 2440.009 kb on + strand at 2440.084 kb on + strand at 2440.725 kb on - strand at 2440.740 kb on - strand, within ABID97_RS11810 at 2441.002 kb on - strand at 2441.466 kb on + strand, within ABID97_RS11815 at 2441.466 kb on + strand, within ABID97_RS11815 at 2441.634 kb on + strand, within ABID97_RS11815 at 2441.634 kb on + strand, within ABID97_RS11815 at 2441.635 kb on - strand, within ABID97_RS11815
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 2,439,782 + ABID97_RS11800 0.69 +0.5 2,439,818 + ABID97_RS11800 0.74 -0.3 2,440,009 + -0.1 2,440,084 + +0.3 2,440,725 - +0.1 2,440,740 - ABID97_RS11810 0.12 +0.4 2,441,002 - +0.5 2,441,466 + ABID97_RS11815 0.52 +0.7 2,441,466 + ABID97_RS11815 0.52 +0.3 2,441,634 + ABID97_RS11815 0.87 +0.2 2,441,634 + ABID97_RS11815 0.87 -0.2 2,441,635 - ABID97_RS11815 0.87 +0.5
Or see this region's nucleotide sequence