Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08920 and ABID97_RS08925 overlap by 1 nucleotides ABID97_RS08925 and ABID97_RS08930 are separated by 2 nucleotides ABID97_RS08930 and ABID97_RS08935 are separated by 32 nucleotides ABID97_RS08935 and ABID97_RS08940 overlap by 47 nucleotides
ABID97_RS08920: ABID97_RS08920 - SDR family NAD(P)-dependent oxidoreductase, at 1,870,006 to 1,870,782
_RS08920
ABID97_RS08925: ABID97_RS08925 - MarR family transcriptional regulator, at 1,870,782 to 1,871,309
_RS08925
ABID97_RS08930: ABID97_RS08930 - thioesterase family protein, at 1,871,312 to 1,871,776
_RS08930
ABID97_RS08935: ABID97_RS08935 - type VI secretion system lipoprotein TssJ, at 1,871,809 to 1,872,492
_RS08935
ABID97_RS08940: ABID97_RS08940 - hypothetical protein, at 1,872,446 to 1,872,706
_RS08940
Position (kb) 1871
1872 Strain fitness (log2 ratio) -1
0
1
2 at 1870.451 kb on - strand, within ABID97_RS08920 at 1870.451 kb on - strand, within ABID97_RS08920 at 1870.457 kb on - strand, within ABID97_RS08920 at 1870.457 kb on - strand, within ABID97_RS08920 at 1870.457 kb on - strand, within ABID97_RS08920 at 1870.469 kb on - strand, within ABID97_RS08920 at 1870.567 kb on - strand, within ABID97_RS08920 at 1870.971 kb on + strand, within ABID97_RS08925 at 1871.414 kb on + strand, within ABID97_RS08930 at 1871.415 kb on - strand, within ABID97_RS08930 at 1871.423 kb on + strand, within ABID97_RS08930 at 1871.484 kb on - strand, within ABID97_RS08930 at 1871.731 kb on + strand at 1871.731 kb on + strand at 1872.118 kb on - strand, within ABID97_RS08935 at 1872.146 kb on - strand, within ABID97_RS08935 at 1872.681 kb on - strand at 1872.761 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 1,870,451 - ABID97_RS08920 0.57 -1.3 1,870,451 - ABID97_RS08920 0.57 -0.2 1,870,457 - ABID97_RS08920 0.58 +0.1 1,870,457 - ABID97_RS08920 0.58 +0.6 1,870,457 - ABID97_RS08920 0.58 -0.2 1,870,469 - ABID97_RS08920 0.60 -0.4 1,870,567 - ABID97_RS08920 0.72 +0.0 1,870,971 + ABID97_RS08925 0.36 -0.1 1,871,414 + ABID97_RS08930 0.22 -0.1 1,871,415 - ABID97_RS08930 0.22 -0.5 1,871,423 + ABID97_RS08930 0.24 +2.3 1,871,484 - ABID97_RS08930 0.37 +0.4 1,871,731 + +0.5 1,871,731 + +0.1 1,872,118 - ABID97_RS08935 0.45 +1.4 1,872,146 - ABID97_RS08935 0.49 +0.0 1,872,681 - +1.0 1,872,761 - -0.1
Or see this region's nucleotide sequence