Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07470

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07465 and ABID97_RS07470 are separated by 49 nucleotidesABID97_RS07470 and ABID97_RS07475 are separated by 17 nucleotides ABID97_RS07465: ABID97_RS07465 - SulP family inorganic anion transporter, at 1,574,796 to 1,576,472 _RS07465 ABID97_RS07470: ABID97_RS07470 - hypothetical protein, at 1,576,522 to 1,576,719 _RS07470 ABID97_RS07475: ABID97_RS07475 - methionine--tRNA ligase, at 1,576,737 to 1,578,830 _RS07475 Position (kb) 1576 1577Strain fitness (log2 ratio) -1 0 1at 1576.184 kb on - strand, within ABID97_RS07465at 1576.411 kb on + strandat 1576.489 kb on - strandat 1576.489 kb on - strandat 1576.489 kb on - strandat 1576.489 kb on - strandat 1576.945 kb on - strandat 1576.945 kb on - strandat 1576.945 kb on - strandat 1576.945 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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1,576,184 - ABID97_RS07465 0.83 +0.1
1,576,411 + -0.2
1,576,489 - +0.2
1,576,489 - +1.6
1,576,489 - -0.1
1,576,489 - +0.0
1,576,945 - +0.0
1,576,945 - +0.0
1,576,945 - +1.4
1,576,945 - -0.9

Or see this region's nucleotide sequence