Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06965

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06955 and ABID97_RS06960 are separated by 8 nucleotidesABID97_RS06960 and ABID97_RS06965 overlap by 4 nucleotidesABID97_RS06965 and ABID97_RS06970 are separated by 135 nucleotides ABID97_RS06955: ABID97_RS06955 - type II secretion system protein N, at 1,474,290 to 1,475,090 _RS06955 ABID97_RS06960: ABID97_RS06960 - type II secretion system protein GspM, at 1,475,099 to 1,475,632 _RS06960 ABID97_RS06965: ABID97_RS06965 - type II secretion system protein GspL, at 1,475,629 to 1,476,840 _RS06965 ABID97_RS06970: ABID97_RS06970 - type II secretion system minor pseudopilin GspK, at 1,476,976 to 1,477,998 _RS06970 Position (kb) 1475 1476 1477Strain fitness (log2 ratio) -1 0 1at 1475.144 kb on + strandat 1475.145 kb on - strandat 1475.145 kb on - strandat 1475.772 kb on - strand, within ABID97_RS06965at 1475.772 kb on - strand, within ABID97_RS06965at 1476.077 kb on + strand, within ABID97_RS06965at 1476.077 kb on + strand, within ABID97_RS06965at 1476.077 kb on + strand, within ABID97_RS06965at 1476.785 kb on + strandat 1476.786 kb on - strandat 1476.868 kb on - strandat 1476.984 kb on + strandat 1477.337 kb on + strand, within ABID97_RS06970at 1477.337 kb on + strand, within ABID97_RS06970

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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1,475,144 + -0.1
1,475,145 - -0.3
1,475,145 - +0.5
1,475,772 - ABID97_RS06965 0.12 +0.0
1,475,772 - ABID97_RS06965 0.12 -0.2
1,476,077 + ABID97_RS06965 0.37 -1.0
1,476,077 + ABID97_RS06965 0.37 -0.7
1,476,077 + ABID97_RS06965 0.37 -0.7
1,476,785 + +0.9
1,476,786 - +0.4
1,476,868 - +0.1
1,476,984 + -0.1
1,477,337 + ABID97_RS06970 0.35 +0.0
1,477,337 + ABID97_RS06970 0.35 +0.1

Or see this region's nucleotide sequence