Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06955 and ABID97_RS06960 are separated by 8 nucleotides ABID97_RS06960 and ABID97_RS06965 overlap by 4 nucleotides ABID97_RS06965 and ABID97_RS06970 are separated by 135 nucleotides
ABID97_RS06955: ABID97_RS06955 - type II secretion system protein N, at 1,474,290 to 1,475,090
_RS06955
ABID97_RS06960: ABID97_RS06960 - type II secretion system protein GspM, at 1,475,099 to 1,475,632
_RS06960
ABID97_RS06965: ABID97_RS06965 - type II secretion system protein GspL, at 1,475,629 to 1,476,840
_RS06965
ABID97_RS06970: ABID97_RS06970 - type II secretion system minor pseudopilin GspK, at 1,476,976 to 1,477,998
_RS06970
Position (kb)
1475
1476
1477 Strain fitness (log2 ratio)
-1
0
1 at 1475.144 kb on + strand at 1475.145 kb on - strand at 1475.145 kb on - strand at 1475.772 kb on - strand, within ABID97_RS06965 at 1475.772 kb on - strand, within ABID97_RS06965 at 1476.077 kb on + strand, within ABID97_RS06965 at 1476.077 kb on + strand, within ABID97_RS06965 at 1476.077 kb on + strand, within ABID97_RS06965 at 1476.785 kb on + strand at 1476.786 kb on - strand at 1476.868 kb on - strand at 1476.984 kb on + strand at 1477.337 kb on + strand, within ABID97_RS06970 at 1477.337 kb on + strand, within ABID97_RS06970
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 1,475,144 + -0.1 1,475,145 - -0.3 1,475,145 - +0.5 1,475,772 - ABID97_RS06965 0.12 +0.0 1,475,772 - ABID97_RS06965 0.12 -0.2 1,476,077 + ABID97_RS06965 0.37 -1.0 1,476,077 + ABID97_RS06965 0.37 -0.7 1,476,077 + ABID97_RS06965 0.37 -0.7 1,476,785 + +0.9 1,476,786 - +0.4 1,476,868 - +0.1 1,476,984 + -0.1 1,477,337 + ABID97_RS06970 0.35 +0.0 1,477,337 + ABID97_RS06970 0.35 +0.1
Or see this region's nucleotide sequence