Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04345 and ABID97_RS04350 are separated by 125 nucleotides ABID97_RS04350 and ABID97_RS04355 are separated by 64 nucleotides ABID97_RS04355 and ABID97_RS04360 are separated by 378 nucleotides ABID97_RS04360 and ABID97_RS04365 are separated by 72 nucleotides
ABID97_RS04345: ABID97_RS04345 - chloride channel protein, at 893,192 to 894,574
_RS04345
ABID97_RS04350: ABID97_RS04350 - single-stranded DNA-binding protein, at 894,700 to 895,266
_RS04350
ABID97_RS04355: ABID97_RS04355 - YebC/PmpR family DNA-binding transcriptional regulator, at 895,331 to 896,044
_RS04355
ABID97_RS04360: ABID97_RS04360 - helicase SNF2, at 896,423 to 896,803
_RS04360
ABID97_RS04365: ABID97_RS04365 - hypothetical protein, at 896,876 to 897,868
_RS04365
Position (kb) 895
896
897 Strain fitness (log2 ratio) -2
-1
0
1 at 894.350 kb on + strand, within ABID97_RS04345 at 894.350 kb on + strand, within ABID97_RS04345 at 894.350 kb on + strand, within ABID97_RS04345 at 894.350 kb on + strand, within ABID97_RS04345 at 894.350 kb on + strand, within ABID97_RS04345 at 894.351 kb on - strand, within ABID97_RS04345 at 894.351 kb on - strand, within ABID97_RS04345 at 894.584 kb on + strand at 894.584 kb on + strand at 894.585 kb on - strand at 894.585 kb on - strand at 894.585 kb on - strand at 895.459 kb on - strand, within ABID97_RS04355 at 895.459 kb on - strand, within ABID97_RS04355 at 895.459 kb on - strand, within ABID97_RS04355 at 895.797 kb on + strand, within ABID97_RS04355 at 895.797 kb on + strand, within ABID97_RS04355 at 895.797 kb on + strand, within ABID97_RS04355 at 896.131 kb on + strand at 896.131 kb on + strand at 896.131 kb on + strand at 896.131 kb on + strand at 896.131 kb on + strand at 896.131 kb on + strand at 896.131 kb on + strand at 896.131 kb on + strand at 896.131 kb on + strand at 896.132 kb on - strand at 896.132 kb on - strand at 896.132 kb on - strand at 896.132 kb on - strand at 896.136 kb on + strand at 896.255 kb on + strand at 896.259 kb on + strand at 896.260 kb on - strand at 896.260 kb on - strand at 896.262 kb on + strand at 896.451 kb on + strand at 896.451 kb on + strand at 896.452 kb on - strand at 896.498 kb on + strand, within ABID97_RS04360 at 896.499 kb on - strand, within ABID97_RS04360 at 896.499 kb on - strand, within ABID97_RS04360 at 896.499 kb on - strand, within ABID97_RS04360 at 896.585 kb on + strand, within ABID97_RS04360 at 896.691 kb on - strand, within ABID97_RS04360 at 896.801 kb on + strand at 896.802 kb on - strand at 897.021 kb on + strand, within ABID97_RS04365 at 897.022 kb on - strand, within ABID97_RS04365
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 894,350 + ABID97_RS04345 0.84 -2.5 894,350 + ABID97_RS04345 0.84 +1.2 894,350 + ABID97_RS04345 0.84 -0.1 894,350 + ABID97_RS04345 0.84 +0.1 894,350 + ABID97_RS04345 0.84 +0.4 894,351 - ABID97_RS04345 0.84 +0.3 894,351 - ABID97_RS04345 0.84 -0.1 894,584 + -2.3 894,584 + -0.9 894,585 - -0.7 894,585 - -0.6 894,585 - +0.3 895,459 - ABID97_RS04355 0.18 -0.1 895,459 - ABID97_RS04355 0.18 -0.3 895,459 - ABID97_RS04355 0.18 -0.4 895,797 + ABID97_RS04355 0.65 +0.2 895,797 + ABID97_RS04355 0.65 -0.4 895,797 + ABID97_RS04355 0.65 -1.0 896,131 + +0.0 896,131 + -0.4 896,131 + -0.4 896,131 + -0.1 896,131 + -0.0 896,131 + -1.0 896,131 + -0.4 896,131 + +0.4 896,131 + -0.5 896,132 - -0.5 896,132 - -0.4 896,132 - +0.2 896,132 - +0.4 896,136 + +1.2 896,255 + -0.3 896,259 + +1.4 896,260 - +0.3 896,260 - +0.4 896,262 + +0.1 896,451 + -0.1 896,451 + +0.5 896,452 - -0.6 896,498 + ABID97_RS04360 0.20 -0.7 896,499 - ABID97_RS04360 0.20 -0.6 896,499 - ABID97_RS04360 0.20 +0.1 896,499 - ABID97_RS04360 0.20 -0.2 896,585 + ABID97_RS04360 0.43 -0.3 896,691 - ABID97_RS04360 0.70 -0.8 896,801 + -0.1 896,802 - +0.1 897,021 + ABID97_RS04365 0.15 +0.3 897,022 - ABID97_RS04365 0.15 +0.2
Or see this region's nucleotide sequence