Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03165 and ABID97_RS03170 overlap by 4 nucleotides ABID97_RS03170 and ABID97_RS03175 overlap by 4 nucleotides ABID97_RS03175 and ABID97_RS03180 are separated by 99 nucleotides
ABID97_RS03165: ABID97_RS03165 - ABC transporter ATP-binding protein, at 640,787 to 641,569
_RS03165
ABID97_RS03170: ABID97_RS03170 - ABC transporter substrate-binding protein, at 641,566 to 642,510
_RS03170
ABID97_RS03175: ABID97_RS03175 - TetR/AcrR family transcriptional regulator, at 642,507 to 643,235
_RS03175
ABID97_RS03180: ABID97_RS03180 - acetoacetate--CoA ligase, at 643,335 to 645,341
_RS03180
Position (kb) 642
643
644 Strain fitness (log2 ratio) -2
-1
0
1
2 at 641.720 kb on + strand, within ABID97_RS03170 at 641.720 kb on + strand, within ABID97_RS03170 at 641.721 kb on - strand, within ABID97_RS03170 at 641.891 kb on + strand, within ABID97_RS03170 at 641.892 kb on - strand, within ABID97_RS03170 at 641.892 kb on - strand, within ABID97_RS03170 at 641.894 kb on + strand, within ABID97_RS03170 at 641.906 kb on + strand, within ABID97_RS03170 at 641.906 kb on + strand, within ABID97_RS03170 at 642.033 kb on - strand, within ABID97_RS03170 at 642.359 kb on + strand, within ABID97_RS03170 at 642.360 kb on - strand, within ABID97_RS03170 at 642.411 kb on - strand, within ABID97_RS03170 at 642.411 kb on - strand, within ABID97_RS03170 at 642.704 kb on - strand, within ABID97_RS03175 at 642.763 kb on + strand, within ABID97_RS03175 at 642.763 kb on + strand, within ABID97_RS03175 at 642.788 kb on - strand, within ABID97_RS03175 at 642.853 kb on + strand, within ABID97_RS03175 at 642.856 kb on + strand, within ABID97_RS03175 at 643.036 kb on + strand, within ABID97_RS03175 at 643.036 kb on + strand, within ABID97_RS03175 at 643.036 kb on + strand, within ABID97_RS03175 at 643.039 kb on + strand, within ABID97_RS03175 at 643.040 kb on - strand, within ABID97_RS03175 at 643.042 kb on + strand, within ABID97_RS03175 at 643.277 kb on - strand at 643.277 kb on - strand at 643.323 kb on + strand at 643.323 kb on + strand at 643.324 kb on - strand at 643.324 kb on - strand at 643.324 kb on - strand at 643.361 kb on - strand at 643.414 kb on - strand at 643.414 kb on - strand at 643.752 kb on + strand, within ABID97_RS03180 at 643.753 kb on - strand, within ABID97_RS03180 at 643.753 kb on - strand, within ABID97_RS03180 at 644.125 kb on - strand, within ABID97_RS03180 at 644.193 kb on + strand, within ABID97_RS03180 at 644.193 kb on + strand, within ABID97_RS03180 at 644.193 kb on + strand, within ABID97_RS03180 at 644.193 kb on + strand, within ABID97_RS03180 at 644.194 kb on - strand, within ABID97_RS03180 at 644.194 kb on - strand, within ABID97_RS03180 at 644.194 kb on - strand, within ABID97_RS03180 at 644.194 kb on - strand, within ABID97_RS03180 at 644.194 kb on - strand, within ABID97_RS03180 at 644.194 kb on - strand, within ABID97_RS03180 at 644.194 kb on - strand, within ABID97_RS03180 at 644.194 kb on - strand, within ABID97_RS03180 at 644.194 kb on - strand, within ABID97_RS03180 at 644.229 kb on + strand, within ABID97_RS03180 at 644.229 kb on + strand, within ABID97_RS03180 at 644.230 kb on - strand, within ABID97_RS03180
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 641,720 + ABID97_RS03170 0.16 +0.2 641,720 + ABID97_RS03170 0.16 -0.3 641,721 - ABID97_RS03170 0.16 -0.2 641,891 + ABID97_RS03170 0.34 +0.1 641,892 - ABID97_RS03170 0.34 -0.4 641,892 - ABID97_RS03170 0.34 -2.0 641,894 + ABID97_RS03170 0.35 -0.0 641,906 + ABID97_RS03170 0.36 -1.1 641,906 + ABID97_RS03170 0.36 -0.2 642,033 - ABID97_RS03170 0.49 -0.7 642,359 + ABID97_RS03170 0.84 +0.1 642,360 - ABID97_RS03170 0.84 -0.8 642,411 - ABID97_RS03170 0.89 -0.2 642,411 - ABID97_RS03170 0.89 -0.3 642,704 - ABID97_RS03175 0.27 -0.0 642,763 + ABID97_RS03175 0.35 -0.0 642,763 + ABID97_RS03175 0.35 +0.1 642,788 - ABID97_RS03175 0.39 +0.3 642,853 + ABID97_RS03175 0.47 +0.5 642,856 + ABID97_RS03175 0.48 +0.2 643,036 + ABID97_RS03175 0.73 -0.8 643,036 + ABID97_RS03175 0.73 +0.0 643,036 + ABID97_RS03175 0.73 +0.1 643,039 + ABID97_RS03175 0.73 +0.2 643,040 - ABID97_RS03175 0.73 -0.8 643,042 + ABID97_RS03175 0.73 -0.6 643,277 - -0.6 643,277 - -0.3 643,323 + -0.3 643,323 + +0.7 643,324 - -0.3 643,324 - +0.3 643,324 - +1.2 643,361 - -0.5 643,414 - +2.6 643,414 - +1.2 643,752 + ABID97_RS03180 0.21 -0.0 643,753 - ABID97_RS03180 0.21 -0.2 643,753 - ABID97_RS03180 0.21 +0.3 644,125 - ABID97_RS03180 0.39 -0.1 644,193 + ABID97_RS03180 0.43 +0.0 644,193 + ABID97_RS03180 0.43 -1.6 644,193 + ABID97_RS03180 0.43 +0.4 644,193 + ABID97_RS03180 0.43 +0.5 644,194 - ABID97_RS03180 0.43 +0.6 644,194 - ABID97_RS03180 0.43 +1.1 644,194 - ABID97_RS03180 0.43 +0.0 644,194 - ABID97_RS03180 0.43 +0.4 644,194 - ABID97_RS03180 0.43 -0.2 644,194 - ABID97_RS03180 0.43 +0.0 644,194 - ABID97_RS03180 0.43 -0.8 644,194 - ABID97_RS03180 0.43 +0.4 644,194 - ABID97_RS03180 0.43 -1.0 644,229 + ABID97_RS03180 0.45 +0.5 644,229 + ABID97_RS03180 0.45 +0.1 644,230 - ABID97_RS03180 0.45 -0.5
Or see this region's nucleotide sequence