Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02730

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02725 and ABID97_RS02730 are separated by 85 nucleotidesABID97_RS02730 and ABID97_RS02735 are separated by 215 nucleotidesABID97_RS02735 and ABID97_RS02740 are separated by 77 nucleotides ABID97_RS02725: ABID97_RS02725 - cardiolipin synthase ClsB, at 555,517 to 556,797 _RS02725 ABID97_RS02730: ABID97_RS02730 - endonuclease/exonuclease/phosphatase family protein, at 556,883 to 557,665 _RS02730 ABID97_RS02735: ABID97_RS02735 - serine/threonine protein kinase, at 557,881 to 558,309 _RS02735 ABID97_RS02740: ABID97_RS02740 - Spy/CpxP family protein refolding chaperone, at 558,387 to 558,947 _RS02740 Position (kb) 556 557 558Strain fitness (log2 ratio) -2 -1 0 1 2at 555.971 kb on + strand, within ABID97_RS02725at 555.972 kb on - strand, within ABID97_RS02725at 555.972 kb on - strand, within ABID97_RS02725at 556.097 kb on + strand, within ABID97_RS02725at 556.098 kb on - strand, within ABID97_RS02725at 556.098 kb on - strand, within ABID97_RS02725at 556.098 kb on - strand, within ABID97_RS02725at 556.098 kb on - strand, within ABID97_RS02725at 556.098 kb on - strand, within ABID97_RS02725at 556.148 kb on + strand, within ABID97_RS02725at 556.148 kb on + strand, within ABID97_RS02725at 556.352 kb on + strand, within ABID97_RS02725at 556.352 kb on + strand, within ABID97_RS02725at 556.400 kb on + strand, within ABID97_RS02725at 556.401 kb on - strand, within ABID97_RS02725at 556.401 kb on - strand, within ABID97_RS02725at 556.401 kb on - strand, within ABID97_RS02725at 556.550 kb on + strand, within ABID97_RS02725at 556.550 kb on + strand, within ABID97_RS02725at 556.551 kb on - strand, within ABID97_RS02725at 556.551 kb on - strand, within ABID97_RS02725at 556.551 kb on - strand, within ABID97_RS02725at 556.791 kb on + strandat 556.983 kb on + strand, within ABID97_RS02730at 556.983 kb on + strand, within ABID97_RS02730at 556.983 kb on + strand, within ABID97_RS02730at 556.983 kb on + strand, within ABID97_RS02730at 556.983 kb on + strand, within ABID97_RS02730at 556.983 kb on + strand, within ABID97_RS02730at 556.983 kb on + strand, within ABID97_RS02730at 556.983 kb on + strand, within ABID97_RS02730at 556.984 kb on - strand, within ABID97_RS02730at 556.984 kb on - strand, within ABID97_RS02730at 556.984 kb on - strand, within ABID97_RS02730at 556.984 kb on - strand, within ABID97_RS02730at 556.984 kb on - strand, within ABID97_RS02730at 556.984 kb on - strand, within ABID97_RS02730at 557.328 kb on + strand, within ABID97_RS02730at 557.329 kb on - strand, within ABID97_RS02730at 557.382 kb on + strand, within ABID97_RS02730at 557.383 kb on - strand, within ABID97_RS02730at 557.439 kb on + strand, within ABID97_RS02730at 557.439 kb on + strand, within ABID97_RS02730at 557.680 kb on + strandat 557.680 kb on + strandat 557.680 kb on + strandat 557.680 kb on + strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.681 kb on - strandat 557.705 kb on + strandat 557.757 kb on - strandat 557.804 kb on + strandat 557.804 kb on + strandat 557.804 kb on + strandat 557.804 kb on + strandat 557.805 kb on - strandat 557.805 kb on - strandat 557.805 kb on - strandat 557.805 kb on - strandat 558.307 kb on + strandat 558.359 kb on - strandat 558.359 kb on - strandat 558.505 kb on + strand, within ABID97_RS02740at 558.505 kb on + strand, within ABID97_RS02740at 558.505 kb on + strand, within ABID97_RS02740at 558.505 kb on + strand, within ABID97_RS02740at 558.505 kb on + strand, within ABID97_RS02740at 558.506 kb on - strand, within ABID97_RS02740at 558.506 kb on - strand, within ABID97_RS02740

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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555,971 + ABID97_RS02725 0.35 -0.2
555,972 - ABID97_RS02725 0.36 -0.1
555,972 - ABID97_RS02725 0.36 +0.1
556,097 + ABID97_RS02725 0.45 +0.6
556,098 - ABID97_RS02725 0.45 -0.5
556,098 - ABID97_RS02725 0.45 -0.5
556,098 - ABID97_RS02725 0.45 +0.6
556,098 - ABID97_RS02725 0.45 -0.3
556,098 - ABID97_RS02725 0.45 +0.2
556,148 + ABID97_RS02725 0.49 +0.0
556,148 + ABID97_RS02725 0.49 +0.2
556,352 + ABID97_RS02725 0.65 -0.2
556,352 + ABID97_RS02725 0.65 +2.4
556,400 + ABID97_RS02725 0.69 +0.2
556,401 - ABID97_RS02725 0.69 +0.2
556,401 - ABID97_RS02725 0.69 -0.8
556,401 - ABID97_RS02725 0.69 +0.3
556,550 + ABID97_RS02725 0.81 -0.1
556,550 + ABID97_RS02725 0.81 +0.1
556,551 - ABID97_RS02725 0.81 -0.0
556,551 - ABID97_RS02725 0.81 -1.8
556,551 - ABID97_RS02725 0.81 -0.3
556,791 + -0.1
556,983 + ABID97_RS02730 0.13 +0.0
556,983 + ABID97_RS02730 0.13 -0.1
556,983 + ABID97_RS02730 0.13 -2.2
556,983 + ABID97_RS02730 0.13 -0.3
556,983 + ABID97_RS02730 0.13 -0.2
556,983 + ABID97_RS02730 0.13 +0.1
556,983 + ABID97_RS02730 0.13 -0.1
556,983 + ABID97_RS02730 0.13 +0.0
556,984 - ABID97_RS02730 0.13 +0.6
556,984 - ABID97_RS02730 0.13 -0.3
556,984 - ABID97_RS02730 0.13 +0.6
556,984 - ABID97_RS02730 0.13 -0.3
556,984 - ABID97_RS02730 0.13 +0.7
556,984 - ABID97_RS02730 0.13 -1.0
557,328 + ABID97_RS02730 0.57 -1.2
557,329 - ABID97_RS02730 0.57 -0.1
557,382 + ABID97_RS02730 0.64 +0.2
557,383 - ABID97_RS02730 0.64 -0.4
557,439 + ABID97_RS02730 0.71 -0.2
557,439 + ABID97_RS02730 0.71 +0.0
557,680 + +0.3
557,680 + -0.9
557,680 + -0.5
557,680 + +0.1
557,681 - +0.0
557,681 - +0.2
557,681 - +0.2
557,681 - -0.2
557,681 - +0.1
557,681 - -0.0
557,681 - +0.1
557,681 - +0.0
557,681 - +0.2
557,705 + +0.6
557,757 - +1.8
557,804 + -0.4
557,804 + -0.3
557,804 + -1.0
557,804 + -0.6
557,805 - +0.4
557,805 - +0.7
557,805 - -0.4
557,805 - -0.5
558,307 + -0.1
558,359 - -0.0
558,359 - +0.2
558,505 + ABID97_RS02740 0.21 -0.1
558,505 + ABID97_RS02740 0.21 +1.8
558,505 + ABID97_RS02740 0.21 +0.6
558,505 + ABID97_RS02740 0.21 -0.1
558,505 + ABID97_RS02740 0.21 +0.2
558,506 - ABID97_RS02740 0.21 +0.4
558,506 - ABID97_RS02740 0.21 -0.2

Or see this region's nucleotide sequence