Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00240 and ABID97_RS00245 are separated by 88 nucleotides ABID97_RS00245 and ABID97_RS00250 overlap by 4 nucleotides ABID97_RS00250 and ABID97_RS00255 are separated by 51 nucleotides
ABID97_RS00240: ABID97_RS00240 - L-glutamate gamma-semialdehyde dehydrogenase, at 54,026 to 56,998
_RS00240
ABID97_RS00245: ABID97_RS00245 - Lrp/AsnC ligand binding domain-containing protein, at 57,087 to 57,560
_RS00245
ABID97_RS00250: ABID97_RS00250 - YggS family pyridoxal phosphate-dependent enzyme, at 57,557 to 58,243
_RS00250
ABID97_RS00255: ABID97_RS00255 - type IV pilus twitching motility protein PilT, at 58,295 to 59,338
_RS00255
Position (kb) 57
58 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 56.400 kb on + strand, within ABID97_RS00240 at 56.400 kb on + strand, within ABID97_RS00240 at 56.401 kb on - strand, within ABID97_RS00240 at 56.401 kb on - strand, within ABID97_RS00240 at 56.401 kb on - strand, within ABID97_RS00240 at 56.401 kb on - strand, within ABID97_RS00240 at 56.401 kb on - strand, within ABID97_RS00240 at 56.412 kb on + strand, within ABID97_RS00240 at 56.461 kb on - strand, within ABID97_RS00240 at 57.037 kb on + strand at 57.037 kb on + strand at 57.037 kb on + strand at 57.038 kb on - strand at 57.249 kb on + strand, within ABID97_RS00245 at 57.250 kb on - strand, within ABID97_RS00245 at 57.307 kb on + strand, within ABID97_RS00245 at 57.307 kb on + strand, within ABID97_RS00245 at 57.307 kb on + strand, within ABID97_RS00245 at 57.307 kb on + strand, within ABID97_RS00245 at 57.308 kb on - strand, within ABID97_RS00245 at 57.308 kb on - strand, within ABID97_RS00245 at 57.411 kb on + strand, within ABID97_RS00245 at 57.412 kb on - strand, within ABID97_RS00245 at 57.507 kb on + strand, within ABID97_RS00245 at 57.507 kb on + strand, within ABID97_RS00245 at 57.508 kb on - strand, within ABID97_RS00245 at 57.508 kb on - strand, within ABID97_RS00245 at 57.558 kb on + strand at 58.211 kb on + strand at 58.211 kb on + strand at 58.212 kb on - strand at 58.212 kb on - strand at 58.212 kb on - strand at 58.244 kb on - strand at 58.304 kb on - strand at 58.448 kb on + strand, within ABID97_RS00255 at 58.448 kb on + strand, within ABID97_RS00255 at 58.448 kb on + strand, within ABID97_RS00255 at 58.448 kb on + strand, within ABID97_RS00255 at 58.449 kb on - strand, within ABID97_RS00255 at 58.449 kb on - strand, within ABID97_RS00255 at 58.449 kb on - strand, within ABID97_RS00255 at 58.449 kb on - strand, within ABID97_RS00255 at 58.481 kb on + strand, within ABID97_RS00255 at 58.481 kb on + strand, within ABID97_RS00255 at 58.481 kb on + strand, within ABID97_RS00255 at 58.482 kb on - strand, within ABID97_RS00255
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 56,400 + ABID97_RS00240 0.80 -2.1 56,400 + ABID97_RS00240 0.80 -2.2 56,401 - ABID97_RS00240 0.80 -5.4 56,401 - ABID97_RS00240 0.80 -1.6 56,401 - ABID97_RS00240 0.80 -2.4 56,401 - ABID97_RS00240 0.80 -3.9 56,401 - ABID97_RS00240 0.80 -3.7 56,412 + ABID97_RS00240 0.80 -4.0 56,461 - ABID97_RS00240 0.82 -4.7 57,037 + -3.9 57,037 + -1.6 57,037 + -3.7 57,038 - -0.9 57,249 + ABID97_RS00245 0.34 +0.8 57,250 - ABID97_RS00245 0.34 -1.2 57,307 + ABID97_RS00245 0.46 -1.2 57,307 + ABID97_RS00245 0.46 -4.0 57,307 + ABID97_RS00245 0.46 -4.1 57,307 + ABID97_RS00245 0.46 +0.6 57,308 - ABID97_RS00245 0.47 -3.3 57,308 - ABID97_RS00245 0.47 -4.2 57,411 + ABID97_RS00245 0.68 -1.5 57,412 - ABID97_RS00245 0.69 +0.8 57,507 + ABID97_RS00245 0.89 -3.4 57,507 + ABID97_RS00245 0.89 -3.8 57,508 - ABID97_RS00245 0.89 -3.0 57,508 - ABID97_RS00245 0.89 -1.0 57,558 + +0.3 58,211 + -1.7 58,211 + -4.3 58,212 - -0.6 58,212 - -1.3 58,212 - -1.5 58,244 - +0.4 58,304 - -0.2 58,448 + ABID97_RS00255 0.15 -2.5 58,448 + ABID97_RS00255 0.15 -1.0 58,448 + ABID97_RS00255 0.15 -1.4 58,448 + ABID97_RS00255 0.15 -1.8 58,449 - ABID97_RS00255 0.15 -1.9 58,449 - ABID97_RS00255 0.15 -2.1 58,449 - ABID97_RS00255 0.15 -3.0 58,449 - ABID97_RS00255 0.15 -2.1 58,481 + ABID97_RS00255 0.18 -2.6 58,481 + ABID97_RS00255 0.18 -3.0 58,481 + ABID97_RS00255 0.18 -2.2 58,482 - ABID97_RS00255 0.18 -1.0
Or see this region's nucleotide sequence