Experiment: Acetate Carbon Source (20mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0477 and PP_0478 are separated by 15 nucleotides PP_0478 and PP_0479 are separated by 22 nucleotides PP_0479 and PP_0480 are separated by 42 nucleotides PP_0480 and PP_0481 are separated by 172 nucleotides
PP_0477: PP_0477 - 30S ribosomal protein S11, at 561,870 to 562,259
_0477
PP_0478: PP_0478 - 30S ribosomal protein S4, at 562,275 to 562,895
_0478
PP_0479: PP_0479 - DNA-directed RNA polymerase subunit alpha, at 562,918 to 563,919
_0479
PP_0480: PP_0480 - 50S ribosomal protein L17, at 563,962 to 564,348
_0480
PP_0481: PP_0481 - Catalase, at 564,521 to 565,960
_0481
Position (kb) 562
563
564 Strain fitness (log2 ratio) -2
-1
0
1 at 564.469 kb on + strand at 564.469 kb on + strand at 564.478 kb on + strand at 564.478 kb on + strand at 564.559 kb on - strand at 564.699 kb on - strand, within PP_0481 at 564.699 kb on - strand, within PP_0481 at 564.703 kb on + strand, within PP_0481 at 564.703 kb on + strand, within PP_0481 at 564.704 kb on - strand, within PP_0481 at 564.724 kb on + strand, within PP_0481 at 564.736 kb on + strand, within PP_0481 at 564.736 kb on + strand, within PP_0481 at 564.787 kb on - strand, within PP_0481 at 564.787 kb on - strand, within PP_0481 at 564.864 kb on - strand, within PP_0481 at 564.864 kb on - strand, within PP_0481 at 564.864 kb on - strand, within PP_0481 at 564.910 kb on - strand, within PP_0481 at 564.910 kb on - strand, within PP_0481
Per-strain Table
Position Strand Gene LocusTag Fraction Acetate Carbon Source (20mM) remove 564,469 + +1.0 564,469 + +0.9 564,478 + -0.2 564,478 + +0.1 564,559 - +0.4 564,699 - PP_0481 0.12 -1.3 564,699 - PP_0481 0.12 +0.2 564,703 + PP_0481 0.13 +0.5 564,703 + PP_0481 0.13 +0.3 564,704 - PP_0481 0.13 -1.4 564,724 + PP_0481 0.14 -0.1 564,736 + PP_0481 0.15 -1.0 564,736 + PP_0481 0.15 -1.1 564,787 - PP_0481 0.18 -0.1 564,787 - PP_0481 0.18 -1.1 564,864 - PP_0481 0.24 -1.8 564,864 - PP_0481 0.24 -0.4 564,864 - PP_0481 0.24 +0.2 564,910 - PP_0481 0.27 -1.1 564,910 - PP_0481 0.27 -1.0
Or see this region's nucleotide sequence