Strain Fitness in Pseudomonas sp. RS175 around PFR28_03628

Experiment: Azelaic carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03626 and PFR28_03627 are separated by 57 nucleotidesPFR28_03627 and PFR28_03628 are separated by 35 nucleotidesPFR28_03628 and PFR28_03629 overlap by 4 nucleotidesPFR28_03629 and PFR28_03630 are separated by 143 nucleotides PFR28_03626: PFR28_03626 - Methyl-accepting chemotaxis protein McpU, at 4,190,130 to 4,192,268 _03626 PFR28_03627: PFR28_03627 - SOS response-associated protein YedK, at 4,192,326 to 4,192,949 _03627 PFR28_03628: PFR28_03628 - hypothetical protein, at 4,192,985 to 4,193,260 _03628 PFR28_03629: PFR28_03629 - hypothetical protein, at 4,193,257 to 4,193,439 _03629 PFR28_03630: PFR28_03630 - hypothetical protein, at 4,193,583 to 4,194,746 _03630 Position (kb) 4192 4193 4194Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4192.565 kb on - strand, within PFR28_03627at 4192.565 kb on - strand, within PFR28_03627at 4192.621 kb on + strand, within PFR28_03627at 4192.654 kb on + strand, within PFR28_03627at 4192.655 kb on - strand, within PFR28_03627at 4192.655 kb on - strand, within PFR28_03627at 4192.862 kb on + strand, within PFR28_03627at 4192.862 kb on + strand, within PFR28_03627at 4192.987 kb on - strandat 4192.987 kb on - strandat 4193.049 kb on + strand, within PFR28_03628at 4193.049 kb on + strand, within PFR28_03628at 4193.050 kb on - strand, within PFR28_03628at 4193.050 kb on - strand, within PFR28_03628at 4193.050 kb on - strand, within PFR28_03628at 4193.050 kb on - strand, within PFR28_03628at 4193.073 kb on + strand, within PFR28_03628at 4193.074 kb on - strand, within PFR28_03628at 4193.074 kb on - strand, within PFR28_03628at 4193.232 kb on + strand, within PFR28_03628at 4193.232 kb on + strand, within PFR28_03628at 4193.232 kb on + strand, within PFR28_03628at 4193.232 kb on + strand, within PFR28_03628at 4193.233 kb on - strandat 4193.233 kb on - strandat 4193.318 kb on + strand, within PFR28_03629at 4193.318 kb on + strand, within PFR28_03629at 4193.319 kb on - strand, within PFR28_03629at 4193.319 kb on - strand, within PFR28_03629at 4193.319 kb on - strand, within PFR28_03629at 4193.319 kb on - strand, within PFR28_03629at 4193.352 kb on + strand, within PFR28_03629at 4193.354 kb on + strand, within PFR28_03629at 4193.354 kb on + strand, within PFR28_03629at 4193.354 kb on + strand, within PFR28_03629at 4193.354 kb on + strand, within PFR28_03629at 4193.354 kb on + strand, within PFR28_03629at 4193.354 kb on + strand, within PFR28_03629at 4193.354 kb on + strand, within PFR28_03629at 4193.354 kb on + strand, within PFR28_03629at 4193.355 kb on - strand, within PFR28_03629at 4193.355 kb on - strand, within PFR28_03629at 4193.355 kb on - strand, within PFR28_03629at 4193.355 kb on - strand, within PFR28_03629at 4193.355 kb on - strand, within PFR28_03629at 4193.355 kb on - strand, within PFR28_03629at 4193.408 kb on + strand, within PFR28_03629at 4193.408 kb on + strand, within PFR28_03629at 4193.408 kb on + strand, within PFR28_03629at 4193.409 kb on - strand, within PFR28_03629at 4193.465 kb on + strandat 4193.465 kb on + strandat 4193.465 kb on + strandat 4193.465 kb on + strandat 4193.465 kb on + strandat 4193.465 kb on + strandat 4193.466 kb on - strandat 4193.466 kb on - strandat 4193.466 kb on - strandat 4193.506 kb on + strandat 4193.506 kb on + strandat 4193.548 kb on + strandat 4193.553 kb on + strandat 4193.553 kb on + strandat 4193.553 kb on + strandat 4193.553 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic carbon 10 mM
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4,192,565 - PFR28_03627 0.38 -2.0
4,192,565 - PFR28_03627 0.38 -1.3
4,192,621 + PFR28_03627 0.47 -2.4
4,192,654 + PFR28_03627 0.53 -1.4
4,192,655 - PFR28_03627 0.53 +2.6
4,192,655 - PFR28_03627 0.53 +1.7
4,192,862 + PFR28_03627 0.86 -0.8
4,192,862 + PFR28_03627 0.86 +1.1
4,192,987 - -2.3
4,192,987 - -1.2
4,193,049 + PFR28_03628 0.23 -3.9
4,193,049 + PFR28_03628 0.23 +0.4
4,193,050 - PFR28_03628 0.24 -0.9
4,193,050 - PFR28_03628 0.24 +0.6
4,193,050 - PFR28_03628 0.24 +0.6
4,193,050 - PFR28_03628 0.24 +2.0
4,193,073 + PFR28_03628 0.32 +0.1
4,193,074 - PFR28_03628 0.32 -2.6
4,193,074 - PFR28_03628 0.32 -1.8
4,193,232 + PFR28_03628 0.89 -0.5
4,193,232 + PFR28_03628 0.89 -0.7
4,193,232 + PFR28_03628 0.89 -0.5
4,193,232 + PFR28_03628 0.89 +1.2
4,193,233 - +0.1
4,193,233 - +0.5
4,193,318 + PFR28_03629 0.33 -0.6
4,193,318 + PFR28_03629 0.33 -0.8
4,193,319 - PFR28_03629 0.34 -2.7
4,193,319 - PFR28_03629 0.34 -1.8
4,193,319 - PFR28_03629 0.34 +2.0
4,193,319 - PFR28_03629 0.34 +1.2
4,193,352 + PFR28_03629 0.52 +0.2
4,193,354 + PFR28_03629 0.53 -0.6
4,193,354 + PFR28_03629 0.53 +2.0
4,193,354 + PFR28_03629 0.53 -0.2
4,193,354 + PFR28_03629 0.53 -1.4
4,193,354 + PFR28_03629 0.53 +2.3
4,193,354 + PFR28_03629 0.53 -0.3
4,193,354 + PFR28_03629 0.53 +1.2
4,193,354 + PFR28_03629 0.53 -1.2
4,193,355 - PFR28_03629 0.54 +1.8
4,193,355 - PFR28_03629 0.54 -0.7
4,193,355 - PFR28_03629 0.54 +0.9
4,193,355 - PFR28_03629 0.54 -1.3
4,193,355 - PFR28_03629 0.54 +0.3
4,193,355 - PFR28_03629 0.54 +0.6
4,193,408 + PFR28_03629 0.83 +0.8
4,193,408 + PFR28_03629 0.83 +0.0
4,193,408 + PFR28_03629 0.83 +0.6
4,193,409 - PFR28_03629 0.83 +1.0
4,193,465 + -2.6
4,193,465 + -0.9
4,193,465 + +0.2
4,193,465 + -0.9
4,193,465 + +1.0
4,193,465 + -0.7
4,193,466 - +0.5
4,193,466 - -2.2
4,193,466 - +0.9
4,193,506 + +1.5
4,193,506 + -2.7
4,193,548 + -1.0
4,193,553 + +0.1
4,193,553 + +0.5
4,193,553 + +0.7
4,193,553 + +1.4

Or see this region's nucleotide sequence