Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF831

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.05 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF830 and GFF831 are separated by 143 nucleotidesGFF831 and GFF832 are separated by 37 nucleotides GFF830 - Adenylosuccinate synthetase (EC 6.3.4.4), at 12,445 to 13,743 GFF830 GFF831 - Nitrite-sensitive transcriptional repressor NsrR, at 13,887 to 14,375 GFF831 GFF832 - '3'-to-5' exoribonuclease RNase R' transl_table=11, at 14,413 to 16,851 GFF832 Position (kb) 13 14 15Strain fitness (log2 ratio) -1 0 1 2at 13.791 kb on + strandat 13.871 kb on - strandat 13.871 kb on - strandat 13.909 kb on - strandat 13.911 kb on - strandat 13.911 kb on - strandat 13.981 kb on + strand, within GFF831at 13.982 kb on - strand, within GFF831at 13.996 kb on - strand, within GFF831at 13.996 kb on - strand, within GFF831at 14.052 kb on + strand, within GFF831at 14.223 kb on - strand, within GFF831at 14.313 kb on + strand, within GFF831at 14.548 kb on - strandat 14.638 kb on + strandat 14.708 kb on + strand, within GFF832at 14.738 kb on - strand, within GFF832at 14.766 kb on + strand, within GFF832at 15.025 kb on - strand, within GFF832at 15.063 kb on + strand, within GFF832at 15.110 kb on + strand, within GFF832at 15.116 kb on - strand, within GFF832at 15.116 kb on - strand, within GFF832at 15.322 kb on + strand, within GFF832at 15.323 kb on - strand, within GFF832at 15.325 kb on + strand, within GFF832at 15.325 kb on + strand, within GFF832at 15.325 kb on + strand, within GFF832at 15.325 kb on + strand, within GFF832at 15.326 kb on - strand, within GFF832at 15.326 kb on - strand, within GFF832at 15.330 kb on - strand, within GFF832

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
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13,791 + +0.5
13,871 - -1.1
13,871 - -0.2
13,909 - +0.1
13,911 - +0.2
13,911 - -0.0
13,981 + GFF831 0.19 +1.1
13,982 - GFF831 0.19 +1.2
13,996 - GFF831 0.22 +1.5
13,996 - GFF831 0.22 +0.0
14,052 + GFF831 0.34 -0.5
14,223 - GFF831 0.69 +1.7
14,313 + GFF831 0.87 -0.6
14,548 - +2.2
14,638 + +1.1
14,708 + GFF832 0.12 +1.6
14,738 - GFF832 0.13 +0.8
14,766 + GFF832 0.14 +2.1
15,025 - GFF832 0.25 +1.1
15,063 + GFF832 0.27 +1.5
15,110 + GFF832 0.29 +1.8
15,116 - GFF832 0.29 +1.5
15,116 - GFF832 0.29 +0.8
15,322 + GFF832 0.37 +2.1
15,323 - GFF832 0.37 +2.2
15,325 + GFF832 0.37 +1.9
15,325 + GFF832 0.37 +1.3
15,325 + GFF832 0.37 +1.1
15,325 + GFF832 0.37 +1.5
15,326 - GFF832 0.37 +1.9
15,326 - GFF832 0.37 +1.1
15,330 - GFF832 0.38 +1.3

Or see this region's nucleotide sequence