Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3020

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.05 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3019 and GFF3020 are separated by 226 nucleotidesGFF3020 and GFF3021 are separated by 101 nucleotides GFF3019 - Protein involved in stability of MscS mechanosensitive channel, at 33,558 to 34,418 GFF3019 GFF3020 - Fructose-bisphosphate aldolase class II (EC 4.1.2.13), at 34,645 to 35,724 GFF3020 GFF3021 - Phosphoglycerate kinase (EC 2.7.2.3), at 35,826 to 36,989 GFF3021 Position (kb) 34 35 36Strain fitness (log2 ratio) -1 0 1at 33.648 kb on - strand, within GFF3019at 33.827 kb on + strand, within GFF3019at 33.896 kb on + strand, within GFF3019at 34.016 kb on - strand, within GFF3019at 34.178 kb on + strand, within GFF3019at 34.239 kb on - strand, within GFF3019at 34.263 kb on + strand, within GFF3019at 34.307 kb on + strand, within GFF3019at 34.310 kb on + strand, within GFF3019at 34.339 kb on + strandat 34.339 kb on + strandat 34.339 kb on + strandat 34.340 kb on - strandat 34.641 kb on + strandat 34.647 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
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33,648 - GFF3019 0.10 +0.4
33,827 + GFF3019 0.31 +0.2
33,896 + GFF3019 0.39 +0.2
34,016 - GFF3019 0.53 -1.4
34,178 + GFF3019 0.72 -0.1
34,239 - GFF3019 0.79 -0.1
34,263 + GFF3019 0.82 -1.4
34,307 + GFF3019 0.87 -0.5
34,310 + GFF3019 0.87 +0.7
34,339 + +0.7
34,339 + -0.2
34,339 + -0.3
34,340 - +0.3
34,641 + -1.1
34,647 - -1.3

Or see this region's nucleotide sequence