Experiment: LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2483 and GFF2484 are separated by 156 nucleotides GFF2484 and GFF2485 are separated by 139 nucleotides GFF2485 and GFF2486 are separated by 40 nucleotides
GFF2483 - Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-), at 2,569 to 5,007
GFF2483
GFF2484 - FIG00639146: hypothetical protein, at 5,164 to 5,469
GFF2484
GFF2485 - Hypothetical UPF0257 lipoprotein ynfC precursor, at 5,609 to 6,286
GFF2485
GFF2486 - Spermidine N1-acetyltransferase (EC 2.3.1.57), at 6,327 to 6,887
GFF2486
Position (kb) 5
6 Strain fitness (log2 ratio) -1
0
1
2 at 4.216 kb on + strand, within GFF2483 at 4.373 kb on + strand, within GFF2483 at 4.379 kb on + strand, within GFF2483 at 4.379 kb on + strand, within GFF2483 at 4.412 kb on + strand, within GFF2483 at 4.412 kb on + strand, within GFF2483 at 4.520 kb on + strand, within GFF2483 at 4.521 kb on - strand, within GFF2483 at 4.530 kb on - strand, within GFF2483 at 4.530 kb on - strand, within GFF2483 at 4.547 kb on + strand, within GFF2483 at 4.548 kb on - strand, within GFF2483 at 4.548 kb on - strand, within GFF2483 at 4.605 kb on + strand, within GFF2483 at 4.606 kb on - strand, within GFF2483 at 4.660 kb on - strand, within GFF2483 at 5.206 kb on - strand, within GFF2484 at 5.501 kb on - strand at 5.521 kb on - strand at 5.571 kb on + strand at 5.602 kb on - strand at 5.774 kb on - strand, within GFF2485 at 5.774 kb on - strand, within GFF2485 at 5.861 kb on + strand, within GFF2485 at 6.052 kb on - strand, within GFF2485 at 6.064 kb on + strand, within GFF2485 at 6.116 kb on + strand, within GFF2485 at 6.254 kb on + strand at 6.255 kb on - strand at 6.255 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.05 MOI remove 4,216 + GFF2483 0.68 -0.3 4,373 + GFF2483 0.74 -1.0 4,379 + GFF2483 0.74 +0.2 4,379 + GFF2483 0.74 +0.1 4,412 + GFF2483 0.76 -0.8 4,412 + GFF2483 0.76 +0.7 4,520 + GFF2483 0.80 -0.3 4,521 - GFF2483 0.80 -0.0 4,530 - GFF2483 0.80 +0.5 4,530 - GFF2483 0.80 +0.5 4,547 + GFF2483 0.81 +0.5 4,548 - GFF2483 0.81 +0.4 4,548 - GFF2483 0.81 -1.2 4,605 + GFF2483 0.83 +1.2 4,606 - GFF2483 0.84 +0.8 4,660 - GFF2483 0.86 +0.8 5,206 - GFF2484 0.14 -1.6 5,501 - -0.4 5,521 - -0.2 5,571 + -0.1 5,602 - +0.2 5,774 - GFF2485 0.24 -0.4 5,774 - GFF2485 0.24 +0.2 5,861 + GFF2485 0.37 +1.8 6,052 - GFF2485 0.65 +0.3 6,064 + GFF2485 0.67 +0.2 6,116 + GFF2485 0.75 -0.4 6,254 + +0.4 6,255 - +0.2 6,255 - -0.1
Or see this region's nucleotide sequence