Experiment: LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2347 and GFF2348 overlap by 18 nucleotides GFF2348 and GFF2349 are separated by 267 nucleotides GFF2349 and GFF2350 are separated by 15 nucleotides
GFF2347 - Hydrogen peroxide-inducible genes activator, at 142,004 to 142,921
GFF2347
GFF2348 - Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1), at 142,904 to 144,238
GFF2348
GFF2349 - Unsaturated fatty acid biosythesis repressor FabR, TetR family, at 144,506 to 145,138
GFF2349
GFF2350 - Putative inner membrane protein, at 145,154 to 145,513
GFF2350
Position (kb) 142
143
144
145 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 141.917 kb on - strand at 141.959 kb on - strand at 141.964 kb on - strand at 141.964 kb on - strand at 142.025 kb on + strand at 142.111 kb on - strand, within GFF2347 at 142.115 kb on - strand, within GFF2347 at 142.189 kb on - strand, within GFF2347 at 142.216 kb on - strand, within GFF2347 at 142.328 kb on - strand, within GFF2347 at 142.370 kb on + strand, within GFF2347 at 142.371 kb on - strand, within GFF2347 at 142.435 kb on + strand, within GFF2347 at 142.712 kb on - strand, within GFF2347 at 142.714 kb on + strand, within GFF2347 at 142.714 kb on + strand, within GFF2347 at 142.720 kb on - strand, within GFF2347 at 142.751 kb on - strand, within GFF2347 at 142.848 kb on - strand at 142.966 kb on - strand at 142.970 kb on - strand at 142.970 kb on - strand at 143.165 kb on - strand, within GFF2348 at 143.409 kb on + strand, within GFF2348 at 143.414 kb on - strand, within GFF2348 at 143.414 kb on - strand, within GFF2348 at 143.506 kb on - strand, within GFF2348 at 143.586 kb on + strand, within GFF2348 at 143.814 kb on + strand, within GFF2348 at 143.984 kb on - strand, within GFF2348 at 143.992 kb on - strand, within GFF2348 at 144.007 kb on + strand, within GFF2348 at 144.022 kb on + strand, within GFF2348 at 144.023 kb on - strand, within GFF2348 at 144.308 kb on - strand at 144.311 kb on - strand at 144.464 kb on + strand at 144.465 kb on - strand at 144.465 kb on - strand at 144.466 kb on + strand at 144.467 kb on - strand at 144.476 kb on + strand at 144.476 kb on + strand at 144.800 kb on - strand, within GFF2349 at 144.917 kb on + strand, within GFF2349 at 144.978 kb on + strand, within GFF2349 at 144.978 kb on + strand, within GFF2349 at 144.979 kb on - strand, within GFF2349 at 144.982 kb on + strand, within GFF2349 at 144.982 kb on + strand, within GFF2349 at 144.982 kb on + strand, within GFF2349 at 145.089 kb on - strand at 145.091 kb on + strand at 145.119 kb on + strand at 145.152 kb on + strand at 145.181 kb on - strand at 145.217 kb on - strand, within GFF2350
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.05 MOI remove 141,917 - +0.1 141,959 - +0.7 141,964 - +0.7 141,964 - +0.9 142,025 + +1.3 142,111 - GFF2347 0.12 +2.2 142,115 - GFF2347 0.12 +0.1 142,189 - GFF2347 0.20 +1.5 142,216 - GFF2347 0.23 +2.1 142,328 - GFF2347 0.35 +1.5 142,370 + GFF2347 0.40 +0.4 142,371 - GFF2347 0.40 +2.7 142,435 + GFF2347 0.47 -1.1 142,712 - GFF2347 0.77 +2.1 142,714 + GFF2347 0.77 +1.4 142,714 + GFF2347 0.77 +1.8 142,720 - GFF2347 0.78 +1.2 142,751 - GFF2347 0.81 +1.3 142,848 - +0.9 142,966 - -1.5 142,970 - +0.5 142,970 - -3.0 143,165 - GFF2348 0.20 -0.5 143,409 + GFF2348 0.38 -2.4 143,414 - GFF2348 0.38 -1.4 143,414 - GFF2348 0.38 -1.5 143,506 - GFF2348 0.45 +1.1 143,586 + GFF2348 0.51 -0.9 143,814 + GFF2348 0.68 -0.7 143,984 - GFF2348 0.81 -2.8 143,992 - GFF2348 0.81 -0.2 144,007 + GFF2348 0.83 -0.9 144,022 + GFF2348 0.84 -1.7 144,023 - GFF2348 0.84 -1.6 144,308 - +0.1 144,311 - -3.0 144,464 + +1.3 144,465 - +0.4 144,465 - +0.7 144,466 + +2.0 144,467 - +1.5 144,476 + -0.2 144,476 + +1.5 144,800 - GFF2349 0.46 +0.0 144,917 + GFF2349 0.65 +0.6 144,978 + GFF2349 0.75 +1.0 144,978 + GFF2349 0.75 +1.0 144,979 - GFF2349 0.75 +0.2 144,982 + GFF2349 0.75 +2.0 144,982 + GFF2349 0.75 +3.2 144,982 + GFF2349 0.75 +1.1 145,089 - -0.4 145,091 + +1.0 145,119 + +0.6 145,152 + -0.1 145,181 - +0.3 145,217 - GFF2350 0.17 -0.6
Or see this region's nucleotide sequence