Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2257

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.05 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2256 and GFF2257 overlap by 4 nucleotidesGFF2257 and GFF2258 are separated by 229 nucleotidesGFF2258 and GFF2259 overlap by 1 nucleotides GFF2256 - FIG00638858: hypothetical protein, at 49,245 to 50,345 GFF2256 GFF2257 - hypothetical protein, at 50,342 to 50,470 GFF2257 GFF2258 - Inner membrane protein, at 50,700 to 51,023 GFF2258 GFF2259 - FIG00350115: hypothetical protein, at 51,023 to 51,682 GFF2259 Position (kb) 50 51Strain fitness (log2 ratio) -2 -1 0 1at 49.530 kb on + strand, within GFF2256at 49.531 kb on - strand, within GFF2256at 49.531 kb on - strand, within GFF2256at 49.531 kb on - strand, within GFF2256at 49.668 kb on + strand, within GFF2256at 50.130 kb on - strand, within GFF2256at 50.172 kb on + strand, within GFF2256at 50.172 kb on + strand, within GFF2256at 50.446 kb on - strand, within GFF2257at 50.568 kb on - strandat 50.568 kb on - strandat 50.667 kb on - strandat 50.668 kb on + strandat 50.668 kb on + strandat 50.701 kb on + strandat 50.709 kb on - strandat 50.775 kb on - strand, within GFF2258at 50.875 kb on - strand, within GFF2258at 50.875 kb on - strand, within GFF2258at 50.969 kb on - strand, within GFF2258at 51.003 kb on - strandat 51.307 kb on + strand, within GFF2259at 51.362 kb on - strand, within GFF2259at 51.362 kb on - strand, within GFF2259at 51.364 kb on + strand, within GFF2259

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
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49,530 + GFF2256 0.26 -2.0
49,531 - GFF2256 0.26 -1.2
49,531 - GFF2256 0.26 +0.5
49,531 - GFF2256 0.26 +0.5
49,668 + GFF2256 0.38 -0.2
50,130 - GFF2256 0.80 +0.5
50,172 + GFF2256 0.84 +0.0
50,172 + GFF2256 0.84 -0.2
50,446 - GFF2257 0.81 -0.8
50,568 - +0.4
50,568 - +0.4
50,667 - +0.3
50,668 + +0.3
50,668 + +0.2
50,701 + -0.8
50,709 - +0.1
50,775 - GFF2258 0.23 -0.5
50,875 - GFF2258 0.54 -0.1
50,875 - GFF2258 0.54 +1.4
50,969 - GFF2258 0.83 -1.0
51,003 - -0.2
51,307 + GFF2259 0.43 -0.0
51,362 - GFF2259 0.51 +0.1
51,362 - GFF2259 0.51 +0.9
51,364 + GFF2259 0.52 -0.1

Or see this region's nucleotide sequence