Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4308

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4307 and EX28DRAFT_4308 are separated by 71 nucleotidesEX28DRAFT_4308 and EX28DRAFT_4309 are separated by 370 nucleotides EX28DRAFT_4307: EX28DRAFT_4307 - Maltoporin (phage lambda and maltose receptor), at 110,268 to 111,581 _4307 EX28DRAFT_4308: EX28DRAFT_4308 - ABC-type sugar transport systems, ATPase components, at 111,653 to 112,762 _4308 EX28DRAFT_4309: EX28DRAFT_4309 - Maltose-binding periplasmic proteins/domains, at 113,133 to 114,323 _4309 Position (kb) 111 112 113Strain fitness (log2 ratio) -2 -1 0 1at 110.653 kb on + strand, within EX28DRAFT_4307at 110.654 kb on - strand, within EX28DRAFT_4307at 110.654 kb on - strand, within EX28DRAFT_4307at 110.657 kb on + strand, within EX28DRAFT_4307at 110.657 kb on + strand, within EX28DRAFT_4307at 110.665 kb on + strand, within EX28DRAFT_4307at 110.665 kb on + strand, within EX28DRAFT_4307at 110.665 kb on + strand, within EX28DRAFT_4307at 110.666 kb on - strand, within EX28DRAFT_4307at 110.666 kb on - strand, within EX28DRAFT_4307at 110.780 kb on + strand, within EX28DRAFT_4307at 110.780 kb on + strand, within EX28DRAFT_4307at 110.780 kb on + strand, within EX28DRAFT_4307at 110.781 kb on - strand, within EX28DRAFT_4307at 110.888 kb on - strand, within EX28DRAFT_4307at 110.888 kb on - strand, within EX28DRAFT_4307at 110.890 kb on + strand, within EX28DRAFT_4307at 110.891 kb on - strand, within EX28DRAFT_4307at 110.891 kb on - strand, within EX28DRAFT_4307at 110.891 kb on - strand, within EX28DRAFT_4307at 111.011 kb on + strand, within EX28DRAFT_4307at 111.011 kb on + strand, within EX28DRAFT_4307at 111.012 kb on - strand, within EX28DRAFT_4307at 111.012 kb on - strand, within EX28DRAFT_4307at 111.012 kb on - strand, within EX28DRAFT_4307at 111.149 kb on - strand, within EX28DRAFT_4307at 111.152 kb on - strand, within EX28DRAFT_4307at 111.307 kb on + strand, within EX28DRAFT_4307at 111.329 kb on - strand, within EX28DRAFT_4307at 111.383 kb on - strand, within EX28DRAFT_4307at 111.409 kb on + strand, within EX28DRAFT_4307at 111.410 kb on - strand, within EX28DRAFT_4307at 111.410 kb on - strand, within EX28DRAFT_4307at 111.488 kb on - strandat 111.584 kb on + strandat 111.585 kb on - strandat 111.655 kb on - strandat 111.671 kb on - strandat 111.671 kb on - strandat 111.758 kb on + strandat 111.759 kb on - strandat 111.818 kb on - strand, within EX28DRAFT_4308at 111.945 kb on - strand, within EX28DRAFT_4308at 112.001 kb on + strand, within EX28DRAFT_4308at 112.063 kb on + strand, within EX28DRAFT_4308at 112.063 kb on + strand, within EX28DRAFT_4308at 112.063 kb on + strand, within EX28DRAFT_4308at 112.099 kb on - strand, within EX28DRAFT_4308at 112.198 kb on - strand, within EX28DRAFT_4308at 112.400 kb on + strand, within EX28DRAFT_4308at 112.477 kb on + strand, within EX28DRAFT_4308at 112.477 kb on + strand, within EX28DRAFT_4308at 112.477 kb on + strand, within EX28DRAFT_4308at 112.478 kb on - strand, within EX28DRAFT_4308at 112.478 kb on - strand, within EX28DRAFT_4308at 112.503 kb on + strand, within EX28DRAFT_4308at 112.512 kb on + strand, within EX28DRAFT_4308at 112.512 kb on + strand, within EX28DRAFT_4308at 112.513 kb on - strand, within EX28DRAFT_4308at 112.639 kb on + strand, within EX28DRAFT_4308at 112.640 kb on - strand, within EX28DRAFT_4308at 112.811 kb on - strandat 113.066 kb on - strandat 113.066 kb on - strandat 113.094 kb on + strandat 113.094 kb on + strandat 113.094 kb on + strandat 113.094 kb on + strandat 113.094 kb on + strandat 113.095 kb on - strandat 113.095 kb on - strandat 113.095 kb on - strandat 113.095 kb on - strandat 113.095 kb on - strandat 113.095 kb on - strandat 113.095 kb on - strandat 113.098 kb on + strandat 113.098 kb on + strandat 113.099 kb on - strandat 113.133 kb on - strandat 113.139 kb on - strandat 113.260 kb on - strand, within EX28DRAFT_4309at 113.260 kb on - strand, within EX28DRAFT_4309at 113.640 kb on - strand, within EX28DRAFT_4309at 113.673 kb on + strand, within EX28DRAFT_4309at 113.673 kb on + strand, within EX28DRAFT_4309at 113.737 kb on - strand, within EX28DRAFT_4309

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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110,653 + EX28DRAFT_4307 0.29 +1.0
110,654 - EX28DRAFT_4307 0.29 +1.1
110,654 - EX28DRAFT_4307 0.29 +0.6
110,657 + EX28DRAFT_4307 0.30 -0.6
110,657 + EX28DRAFT_4307 0.30 -1.2
110,665 + EX28DRAFT_4307 0.30 +1.1
110,665 + EX28DRAFT_4307 0.30 +0.1
110,665 + EX28DRAFT_4307 0.30 -0.1
110,666 - EX28DRAFT_4307 0.30 -0.4
110,666 - EX28DRAFT_4307 0.30 +0.0
110,780 + EX28DRAFT_4307 0.39 +0.7
110,780 + EX28DRAFT_4307 0.39 +0.0
110,780 + EX28DRAFT_4307 0.39 -1.0
110,781 - EX28DRAFT_4307 0.39 +0.3
110,888 - EX28DRAFT_4307 0.47 -0.3
110,888 - EX28DRAFT_4307 0.47 +0.4
110,890 + EX28DRAFT_4307 0.47 +0.7
110,891 - EX28DRAFT_4307 0.47 +0.2
110,891 - EX28DRAFT_4307 0.47 -0.3
110,891 - EX28DRAFT_4307 0.47 -0.2
111,011 + EX28DRAFT_4307 0.57 -1.1
111,011 + EX28DRAFT_4307 0.57 +0.2
111,012 - EX28DRAFT_4307 0.57 -0.9
111,012 - EX28DRAFT_4307 0.57 -2.0
111,012 - EX28DRAFT_4307 0.57 -0.8
111,149 - EX28DRAFT_4307 0.67 +0.2
111,152 - EX28DRAFT_4307 0.67 +0.3
111,307 + EX28DRAFT_4307 0.79 -1.0
111,329 - EX28DRAFT_4307 0.81 +0.5
111,383 - EX28DRAFT_4307 0.85 -1.1
111,409 + EX28DRAFT_4307 0.87 +0.3
111,410 - EX28DRAFT_4307 0.87 +0.2
111,410 - EX28DRAFT_4307 0.87 -0.6
111,488 - +0.2
111,584 + +0.2
111,585 - -0.1
111,655 - -0.1
111,671 - +0.3
111,671 - -1.3
111,758 + +0.2
111,759 - +0.0
111,818 - EX28DRAFT_4308 0.15 -1.2
111,945 - EX28DRAFT_4308 0.26 +0.6
112,001 + EX28DRAFT_4308 0.31 -1.5
112,063 + EX28DRAFT_4308 0.37 -0.2
112,063 + EX28DRAFT_4308 0.37 -0.0
112,063 + EX28DRAFT_4308 0.37 -0.0
112,099 - EX28DRAFT_4308 0.40 -0.1
112,198 - EX28DRAFT_4308 0.49 -0.7
112,400 + EX28DRAFT_4308 0.67 -0.6
112,477 + EX28DRAFT_4308 0.74 +0.5
112,477 + EX28DRAFT_4308 0.74 +0.1
112,477 + EX28DRAFT_4308 0.74 -1.5
112,478 - EX28DRAFT_4308 0.74 +0.0
112,478 - EX28DRAFT_4308 0.74 -0.1
112,503 + EX28DRAFT_4308 0.77 +0.5
112,512 + EX28DRAFT_4308 0.77 -0.1
112,512 + EX28DRAFT_4308 0.77 +0.8
112,513 - EX28DRAFT_4308 0.77 +0.0
112,639 + EX28DRAFT_4308 0.89 -0.1
112,640 - EX28DRAFT_4308 0.89 -1.3
112,811 - -0.8
113,066 - +0.2
113,066 - +1.5
113,094 + -0.4
113,094 + +0.6
113,094 + +0.3
113,094 + -1.7
113,094 + -0.5
113,095 - +0.8
113,095 - -0.1
113,095 - -0.7
113,095 - -0.8
113,095 - +0.0
113,095 - -0.2
113,095 - +1.6
113,098 + +0.8
113,098 + +0.1
113,099 - +0.2
113,133 - -2.3
113,139 - +0.8
113,260 - EX28DRAFT_4309 0.11 -0.5
113,260 - EX28DRAFT_4309 0.11 +0.2
113,640 - EX28DRAFT_4309 0.43 +0.1
113,673 + EX28DRAFT_4309 0.45 -0.1
113,673 + EX28DRAFT_4309 0.45 +0.7
113,737 - EX28DRAFT_4309 0.51 +0.3

Or see this region's nucleotide sequence