Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2951

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2949 and EX28DRAFT_2950 are separated by 110 nucleotidesEX28DRAFT_2950 and EX28DRAFT_2951 are separated by 165 nucleotidesEX28DRAFT_2951 and EX28DRAFT_2952 are separated by 51 nucleotidesEX28DRAFT_2952 and EX28DRAFT_2953 are separated by 116 nucleotides EX28DRAFT_2949: EX28DRAFT_2949 - folate-binding protein YgfZ, at 258,486 to 259,466 _2949 EX28DRAFT_2950: EX28DRAFT_2950 - channel protein, hemolysin III family, at 259,577 to 260,236 _2950 EX28DRAFT_2951: EX28DRAFT_2951 - Uncharacterized protein conserved in bacteria, at 260,402 to 260,713 _2951 EX28DRAFT_2952: EX28DRAFT_2952 - transcriptional regulator, RpiR family, at 260,765 to 261,496 _2952 EX28DRAFT_2953: EX28DRAFT_2953 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 261,613 to 263,046 _2953 Position (kb) 260 261Strain fitness (log2 ratio) -2 -1 0 1 2at 259.472 kb on + strandat 259.472 kb on + strandat 259.472 kb on + strandat 259.511 kb on + strandat 259.593 kb on + strandat 259.599 kb on + strandat 259.599 kb on + strandat 259.600 kb on - strandat 259.600 kb on - strandat 259.662 kb on + strand, within EX28DRAFT_2950at 259.705 kb on - strand, within EX28DRAFT_2950at 259.718 kb on + strand, within EX28DRAFT_2950at 259.767 kb on + strand, within EX28DRAFT_2950at 259.768 kb on - strand, within EX28DRAFT_2950at 259.803 kb on + strand, within EX28DRAFT_2950at 259.803 kb on + strand, within EX28DRAFT_2950at 259.849 kb on + strand, within EX28DRAFT_2950at 259.849 kb on + strand, within EX28DRAFT_2950at 259.941 kb on + strand, within EX28DRAFT_2950at 259.941 kb on + strand, within EX28DRAFT_2950at 259.941 kb on + strand, within EX28DRAFT_2950at 259.942 kb on - strand, within EX28DRAFT_2950at 259.942 kb on - strand, within EX28DRAFT_2950at 259.962 kb on + strand, within EX28DRAFT_2950at 259.963 kb on - strand, within EX28DRAFT_2950at 259.963 kb on - strand, within EX28DRAFT_2950at 259.966 kb on + strand, within EX28DRAFT_2950at 259.966 kb on + strand, within EX28DRAFT_2950at 260.057 kb on - strand, within EX28DRAFT_2950at 260.076 kb on + strand, within EX28DRAFT_2950at 260.129 kb on + strand, within EX28DRAFT_2950at 260.276 kb on + strandat 260.276 kb on + strandat 260.280 kb on + strandat 260.280 kb on + strandat 260.280 kb on + strandat 260.280 kb on + strandat 260.281 kb on - strandat 260.281 kb on - strandat 260.281 kb on - strandat 260.286 kb on - strandat 260.351 kb on - strandat 260.364 kb on + strandat 260.477 kb on - strand, within EX28DRAFT_2951at 260.477 kb on - strand, within EX28DRAFT_2951at 260.568 kb on + strand, within EX28DRAFT_2951at 260.717 kb on - strandat 260.752 kb on - strandat 260.822 kb on + strandat 260.822 kb on + strandat 260.822 kb on + strandat 260.822 kb on + strandat 260.823 kb on - strandat 260.823 kb on - strandat 260.823 kb on - strandat 260.823 kb on - strandat 260.852 kb on + strand, within EX28DRAFT_2952at 260.852 kb on + strand, within EX28DRAFT_2952at 260.852 kb on + strand, within EX28DRAFT_2952at 260.853 kb on - strand, within EX28DRAFT_2952at 260.853 kb on - strand, within EX28DRAFT_2952at 260.853 kb on - strand, within EX28DRAFT_2952at 260.853 kb on - strand, within EX28DRAFT_2952at 260.927 kb on - strand, within EX28DRAFT_2952at 261.066 kb on + strand, within EX28DRAFT_2952at 261.082 kb on + strand, within EX28DRAFT_2952at 261.106 kb on + strand, within EX28DRAFT_2952at 261.108 kb on + strand, within EX28DRAFT_2952at 261.203 kb on + strand, within EX28DRAFT_2952at 261.332 kb on - strand, within EX28DRAFT_2952at 261.373 kb on + strand, within EX28DRAFT_2952at 261.446 kb on + strandat 261.449 kb on - strandat 261.518 kb on - strandat 261.544 kb on + strandat 261.588 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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259,472 + +0.3
259,472 + +0.4
259,472 + -0.3
259,511 + -1.0
259,593 + -0.3
259,599 + +1.4
259,599 + -1.2
259,600 - +0.6
259,600 - -0.4
259,662 + EX28DRAFT_2950 0.13 -1.0
259,705 - EX28DRAFT_2950 0.19 +0.6
259,718 + EX28DRAFT_2950 0.21 +0.4
259,767 + EX28DRAFT_2950 0.29 +0.4
259,768 - EX28DRAFT_2950 0.29 -0.3
259,803 + EX28DRAFT_2950 0.34 +0.5
259,803 + EX28DRAFT_2950 0.34 +0.0
259,849 + EX28DRAFT_2950 0.41 -0.6
259,849 + EX28DRAFT_2950 0.41 +0.6
259,941 + EX28DRAFT_2950 0.55 +0.5
259,941 + EX28DRAFT_2950 0.55 -0.0
259,941 + EX28DRAFT_2950 0.55 +1.1
259,942 - EX28DRAFT_2950 0.55 -0.4
259,942 - EX28DRAFT_2950 0.55 +0.8
259,962 + EX28DRAFT_2950 0.58 -0.5
259,963 - EX28DRAFT_2950 0.58 +0.1
259,963 - EX28DRAFT_2950 0.58 +1.0
259,966 + EX28DRAFT_2950 0.59 -0.3
259,966 + EX28DRAFT_2950 0.59 -0.0
260,057 - EX28DRAFT_2950 0.73 -0.8
260,076 + EX28DRAFT_2950 0.76 +0.0
260,129 + EX28DRAFT_2950 0.84 +0.6
260,276 + +0.4
260,276 + +0.2
260,280 + -1.1
260,280 + +0.1
260,280 + +0.0
260,280 + -0.1
260,281 - +0.4
260,281 - -0.6
260,281 - -0.1
260,286 - -0.1
260,351 - -0.2
260,364 + +0.1
260,477 - EX28DRAFT_2951 0.24 -2.4
260,477 - EX28DRAFT_2951 0.24 -0.4
260,568 + EX28DRAFT_2951 0.53 -1.1
260,717 - +0.1
260,752 - +0.6
260,822 + +0.7
260,822 + -0.0
260,822 + -0.1
260,822 + -1.5
260,823 - +2.0
260,823 - -0.1
260,823 - -0.4
260,823 - -0.8
260,852 + EX28DRAFT_2952 0.12 -0.9
260,852 + EX28DRAFT_2952 0.12 +0.3
260,852 + EX28DRAFT_2952 0.12 -0.1
260,853 - EX28DRAFT_2952 0.12 +0.0
260,853 - EX28DRAFT_2952 0.12 -0.3
260,853 - EX28DRAFT_2952 0.12 -0.7
260,853 - EX28DRAFT_2952 0.12 -0.8
260,927 - EX28DRAFT_2952 0.22 -0.1
261,066 + EX28DRAFT_2952 0.41 -0.3
261,082 + EX28DRAFT_2952 0.43 -0.2
261,106 + EX28DRAFT_2952 0.47 +1.2
261,108 + EX28DRAFT_2952 0.47 -0.2
261,203 + EX28DRAFT_2952 0.60 -0.0
261,332 - EX28DRAFT_2952 0.77 +1.8
261,373 + EX28DRAFT_2952 0.83 -0.4
261,446 + +0.4
261,449 - -0.7
261,518 - -0.1
261,544 + +0.2
261,588 - +0.4

Or see this region's nucleotide sequence