Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2913

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2910 and EX28DRAFT_2911 are separated by 95 nucleotidesEX28DRAFT_2911 and EX28DRAFT_2912 are separated by 118 nucleotidesEX28DRAFT_2912 and EX28DRAFT_2913 are separated by 244 nucleotidesEX28DRAFT_2913 and EX28DRAFT_2914 overlap by 40 nucleotidesEX28DRAFT_2914 and EX28DRAFT_2915 are separated by 220 nucleotides EX28DRAFT_2910: EX28DRAFT_2910 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 220,927 to 223,086 _2910 EX28DRAFT_2911: EX28DRAFT_2911 - RNA, at 223,182 to 223,267 _2911 EX28DRAFT_2912: EX28DRAFT_2912 - RNA, at 223,386 to 223,466 _2912 EX28DRAFT_2913: EX28DRAFT_2913 - Transcriptional regulators, at 223,711 to 224,727 _2913 EX28DRAFT_2914: EX28DRAFT_2914 - Acetyltransferase (GNAT) family, at 224,688 to 225,173 _2914 EX28DRAFT_2915: EX28DRAFT_2915 - Transcriptional regulators, at 225,394 to 226,431 _2915 Position (kb) 223 224 225Strain fitness (log2 ratio) -3 -2 -1 0 1at 222.735 kb on - strand, within EX28DRAFT_2910at 222.765 kb on + strand, within EX28DRAFT_2910at 222.766 kb on - strand, within EX28DRAFT_2910at 222.814 kb on + strand, within EX28DRAFT_2910at 222.891 kb on - strandat 222.912 kb on + strandat 222.912 kb on + strandat 222.912 kb on + strandat 222.913 kb on - strandat 222.913 kb on - strandat 222.913 kb on - strandat 222.913 kb on - strandat 222.914 kb on + strandat 222.914 kb on + strandat 222.914 kb on + strandat 222.914 kb on + strandat 222.915 kb on - strandat 222.946 kb on + strandat 222.968 kb on - strandat 223.054 kb on - strandat 223.065 kb on + strandat 223.082 kb on - strandat 223.082 kb on - strandat 223.123 kb on - strandat 223.126 kb on - strandat 223.126 kb on - strandat 223.126 kb on - strandat 223.141 kb on - strandat 223.226 kb on - strand, within EX28DRAFT_2911at 223.235 kb on + strand, within EX28DRAFT_2911at 223.236 kb on - strand, within EX28DRAFT_2911at 223.349 kb on - strandat 223.419 kb on - strand, within EX28DRAFT_2912at 223.419 kb on - strand, within EX28DRAFT_2912at 223.451 kb on + strand, within EX28DRAFT_2912at 223.452 kb on - strand, within EX28DRAFT_2912at 223.457 kb on + strand, within EX28DRAFT_2912at 223.458 kb on - strand, within EX28DRAFT_2912at 223.458 kb on - strand, within EX28DRAFT_2912at 223.458 kb on - strand, within EX28DRAFT_2912at 223.478 kb on - strandat 223.490 kb on - strandat 223.492 kb on + strandat 223.493 kb on - strandat 223.493 kb on - strandat 223.493 kb on - strandat 223.534 kb on + strandat 223.844 kb on - strand, within EX28DRAFT_2913at 223.844 kb on - strand, within EX28DRAFT_2913at 223.844 kb on - strand, within EX28DRAFT_2913at 224.007 kb on + strand, within EX28DRAFT_2913at 224.008 kb on - strand, within EX28DRAFT_2913at 224.306 kb on - strand, within EX28DRAFT_2913at 224.440 kb on + strand, within EX28DRAFT_2913at 224.776 kb on + strand, within EX28DRAFT_2914at 224.776 kb on + strand, within EX28DRAFT_2914at 224.777 kb on - strand, within EX28DRAFT_2914at 224.777 kb on - strand, within EX28DRAFT_2914at 224.859 kb on - strand, within EX28DRAFT_2914at 224.917 kb on + strand, within EX28DRAFT_2914at 224.918 kb on - strand, within EX28DRAFT_2914at 224.918 kb on - strand, within EX28DRAFT_2914at 225.057 kb on - strand, within EX28DRAFT_2914at 225.146 kb on - strandat 225.196 kb on + strandat 225.197 kb on - strandat 225.197 kb on - strandat 225.233 kb on + strandat 225.252 kb on + strandat 225.253 kb on - strandat 225.262 kb on + strandat 225.336 kb on + strandat 225.357 kb on + strandat 225.372 kb on + strandat 225.373 kb on - strandat 225.390 kb on + strandat 225.391 kb on - strandat 225.391 kb on - strandat 225.391 kb on - strandat 225.486 kb on + strandat 225.610 kb on + strand, within EX28DRAFT_2915at 225.611 kb on - strand, within EX28DRAFT_2915

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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222,735 - EX28DRAFT_2910 0.84 +0.2
222,765 + EX28DRAFT_2910 0.85 +0.1
222,766 - EX28DRAFT_2910 0.85 +0.0
222,814 + EX28DRAFT_2910 0.87 -0.3
222,891 - +0.3
222,912 + -0.6
222,912 + -2.7
222,912 + +0.2
222,913 - +1.0
222,913 - -0.3
222,913 - -0.0
222,913 - +0.1
222,914 + -0.9
222,914 + -0.4
222,914 + -0.6
222,914 + -0.2
222,915 - +0.4
222,946 + -0.4
222,968 - -1.1
223,054 - -0.1
223,065 + -3.1
223,082 - +0.7
223,082 - +0.4
223,123 - -0.3
223,126 - -0.1
223,126 - -0.4
223,126 - -0.3
223,141 - -1.3
223,226 - EX28DRAFT_2911 0.51 -0.5
223,235 + EX28DRAFT_2911 0.62 +0.1
223,236 - EX28DRAFT_2911 0.63 -0.9
223,349 - -0.5
223,419 - EX28DRAFT_2912 0.41 +0.0
223,419 - EX28DRAFT_2912 0.41 +0.3
223,451 + EX28DRAFT_2912 0.80 -0.2
223,452 - EX28DRAFT_2912 0.81 -0.2
223,457 + EX28DRAFT_2912 0.88 -0.3
223,458 - EX28DRAFT_2912 0.89 +0.2
223,458 - EX28DRAFT_2912 0.89 +0.1
223,458 - EX28DRAFT_2912 0.89 +0.1
223,478 - -0.2
223,490 - -2.4
223,492 + +0.5
223,493 - -0.0
223,493 - -1.1
223,493 - -0.1
223,534 + +0.3
223,844 - EX28DRAFT_2913 0.13 -0.2
223,844 - EX28DRAFT_2913 0.13 +0.0
223,844 - EX28DRAFT_2913 0.13 +0.2
224,007 + EX28DRAFT_2913 0.29 +0.3
224,008 - EX28DRAFT_2913 0.29 +1.0
224,306 - EX28DRAFT_2913 0.59 +0.2
224,440 + EX28DRAFT_2913 0.72 +0.0
224,776 + EX28DRAFT_2914 0.18 -0.5
224,776 + EX28DRAFT_2914 0.18 +0.2
224,777 - EX28DRAFT_2914 0.18 +1.2
224,777 - EX28DRAFT_2914 0.18 +0.3
224,859 - EX28DRAFT_2914 0.35 +0.6
224,917 + EX28DRAFT_2914 0.47 +0.4
224,918 - EX28DRAFT_2914 0.47 -0.7
224,918 - EX28DRAFT_2914 0.47 +0.3
225,057 - EX28DRAFT_2914 0.76 +0.2
225,146 - +0.4
225,196 + -0.2
225,197 - +0.1
225,197 - -0.3
225,233 + -0.7
225,252 + +1.0
225,253 - -0.7
225,262 + -0.1
225,336 + +0.1
225,357 + +0.8
225,372 + -0.2
225,373 - -0.0
225,390 + -0.1
225,391 - +0.0
225,391 - +0.9
225,391 - -0.7
225,486 + -0.3
225,610 + EX28DRAFT_2915 0.21 +0.3
225,611 - EX28DRAFT_2915 0.21 -0.9

Or see this region's nucleotide sequence