Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2102 and EX28DRAFT_2103 are separated by 184 nucleotides EX28DRAFT_2103 and EX28DRAFT_2104 are separated by 30 nucleotides EX28DRAFT_2104 and EX28DRAFT_2105 are separated by 273 nucleotides
EX28DRAFT_2102: EX28DRAFT_2102 - Nitroreductase, at 2,125,917 to 2,126,639
_2102
EX28DRAFT_2103: EX28DRAFT_2103 - Glutaredoxin, GrxA family, at 2,126,824 to 2,127,093
_2103
EX28DRAFT_2104: EX28DRAFT_2104 - Putative inner membrane protein of Enterobacteriaceae, at 2,127,124 to 2,127,498
_2104
EX28DRAFT_2105: EX28DRAFT_2105 - Predicted permease, at 2,127,772 to 2,129,457
_2105
Position (kb)
2127
2128 Strain fitness (log2 ratio)
-1
0
1 at 2126.241 kb on - strand, within EX28DRAFT_2102 at 2126.257 kb on + strand, within EX28DRAFT_2102 at 2126.257 kb on + strand, within EX28DRAFT_2102 at 2126.258 kb on - strand, within EX28DRAFT_2102 at 2126.546 kb on + strand, within EX28DRAFT_2102 at 2126.625 kb on + strand at 2126.682 kb on + strand at 2126.683 kb on - strand at 2126.704 kb on - strand at 2126.704 kb on - strand at 2126.704 kb on - strand at 2126.718 kb on - strand at 2126.718 kb on - strand at 2126.723 kb on + strand at 2126.723 kb on + strand at 2126.723 kb on + strand at 2126.724 kb on - strand at 2126.728 kb on + strand at 2126.779 kb on + strand at 2126.779 kb on + strand at 2126.780 kb on - strand at 2126.780 kb on - strand at 2126.780 kb on - strand at 2126.781 kb on + strand at 2126.781 kb on + strand at 2126.782 kb on - strand at 2126.782 kb on - strand at 2126.782 kb on - strand at 2126.782 kb on - strand at 2126.788 kb on + strand at 2126.789 kb on - strand at 2127.091 kb on + strand at 2127.125 kb on + strand at 2127.147 kb on + strand at 2127.156 kb on + strand at 2127.157 kb on - strand at 2127.170 kb on + strand, within EX28DRAFT_2104 at 2127.170 kb on + strand, within EX28DRAFT_2104 at 2127.171 kb on - strand, within EX28DRAFT_2104 at 2127.247 kb on + strand, within EX28DRAFT_2104 at 2127.251 kb on + strand, within EX28DRAFT_2104 at 2127.251 kb on + strand, within EX28DRAFT_2104 at 2127.251 kb on + strand, within EX28DRAFT_2104 at 2127.252 kb on - strand, within EX28DRAFT_2104 at 2127.447 kb on + strand, within EX28DRAFT_2104 at 2127.489 kb on + strand at 2127.489 kb on + strand at 2127.514 kb on + strand at 2127.514 kb on + strand at 2127.515 kb on - strand at 2127.528 kb on - strand at 2127.608 kb on + strand at 2127.608 kb on + strand at 2127.608 kb on + strand at 2127.609 kb on - strand at 2127.612 kb on + strand at 2127.627 kb on - strand at 2127.659 kb on + strand at 2127.667 kb on - strand at 2127.797 kb on + strand at 2127.808 kb on + strand at 2127.821 kb on + strand at 2127.822 kb on - strand at 2127.914 kb on + strand at 2127.978 kb on + strand, within EX28DRAFT_2105 at 2128.395 kb on + strand, within EX28DRAFT_2105 at 2128.402 kb on + strand, within EX28DRAFT_2105
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,126,241 - EX28DRAFT_2102 0.45 +0.3 2,126,257 + EX28DRAFT_2102 0.47 -0.3 2,126,257 + EX28DRAFT_2102 0.47 -1.2 2,126,258 - EX28DRAFT_2102 0.47 -0.1 2,126,546 + EX28DRAFT_2102 0.87 -0.1 2,126,625 + +0.3 2,126,682 + -0.0 2,126,683 - +0.9 2,126,704 - -0.5 2,126,704 - -1.4 2,126,704 - +0.2 2,126,718 - +0.1 2,126,718 - -0.6 2,126,723 + +0.3 2,126,723 + -0.1 2,126,723 + -0.2 2,126,724 - -0.1 2,126,728 + -0.4 2,126,779 + +0.2 2,126,779 + -0.3 2,126,780 - -0.3 2,126,780 - -0.8 2,126,780 - +0.6 2,126,781 + +0.6 2,126,781 + +0.3 2,126,782 - -0.0 2,126,782 - +1.2 2,126,782 - -1.7 2,126,782 - +0.6 2,126,788 + -0.5 2,126,789 - +0.4 2,127,091 + +1.5 2,127,125 + +0.4 2,127,147 + -0.3 2,127,156 + -1.4 2,127,157 - +0.2 2,127,170 + EX28DRAFT_2104 0.12 -0.2 2,127,170 + EX28DRAFT_2104 0.12 -0.7 2,127,171 - EX28DRAFT_2104 0.13 +0.1 2,127,247 + EX28DRAFT_2104 0.33 -0.2 2,127,251 + EX28DRAFT_2104 0.34 -0.3 2,127,251 + EX28DRAFT_2104 0.34 +0.6 2,127,251 + EX28DRAFT_2104 0.34 -0.9 2,127,252 - EX28DRAFT_2104 0.34 +0.1 2,127,447 + EX28DRAFT_2104 0.86 -0.8 2,127,489 + -0.2 2,127,489 + +1.1 2,127,514 + -0.4 2,127,514 + -0.6 2,127,515 - +0.1 2,127,528 - +1.6 2,127,608 + +0.0 2,127,608 + -0.4 2,127,608 + +0.0 2,127,609 - +0.1 2,127,612 + -0.4 2,127,627 - +0.1 2,127,659 + +0.3 2,127,667 - -1.0 2,127,797 + +0.1 2,127,808 + -1.4 2,127,821 + +0.4 2,127,822 - +0.5 2,127,914 + -0.1 2,127,978 + EX28DRAFT_2105 0.12 +1.1 2,128,395 + EX28DRAFT_2105 0.37 +0.2 2,128,402 + EX28DRAFT_2105 0.37 +0.1
Or see this region's nucleotide sequence