Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1918

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1916 and EX28DRAFT_1917 are separated by 7 nucleotidesEX28DRAFT_1917 and EX28DRAFT_1918 are separated by 9 nucleotidesEX28DRAFT_1918 and EX28DRAFT_1919 are separated by 9 nucleotidesEX28DRAFT_1919 and EX28DRAFT_1920 are separated by 21 nucleotides EX28DRAFT_1916: EX28DRAFT_1916 - pyrimidine utilization protein C, at 1,927,257 to 1,927,643 _1916 EX28DRAFT_1917: EX28DRAFT_1917 - pyrimidine utilization protein D, at 1,927,651 to 1,928,451 _1917 EX28DRAFT_1918: EX28DRAFT_1918 - Nitroreductase, at 1,928,461 to 1,929,051 _1918 EX28DRAFT_1919: EX28DRAFT_1919 - pyrimidine utilization flavin reductase protein F, at 1,929,061 to 1,929,555 _1919 EX28DRAFT_1920: EX28DRAFT_1920 - pyrimidine utilization transport protein G, at 1,929,577 to 1,930,899 _1920 Position (kb) 1928 1929 1930Strain fitness (log2 ratio) -1 0 1at 1927.512 kb on + strand, within EX28DRAFT_1916at 1927.533 kb on + strand, within EX28DRAFT_1916at 1927.533 kb on + strand, within EX28DRAFT_1916at 1927.650 kb on + strandat 1927.651 kb on - strandat 1927.704 kb on + strandat 1927.732 kb on + strand, within EX28DRAFT_1917at 1927.733 kb on - strand, within EX28DRAFT_1917at 1927.784 kb on - strand, within EX28DRAFT_1917at 1928.050 kb on + strand, within EX28DRAFT_1917at 1928.260 kb on - strand, within EX28DRAFT_1917at 1928.260 kb on - strand, within EX28DRAFT_1917at 1928.448 kb on - strandat 1928.449 kb on + strandat 1928.459 kb on + strandat 1928.570 kb on - strand, within EX28DRAFT_1918at 1928.791 kb on - strand, within EX28DRAFT_1918at 1928.852 kb on - strand, within EX28DRAFT_1918at 1929.075 kb on + strandat 1929.212 kb on + strand, within EX28DRAFT_1919at 1929.212 kb on + strand, within EX28DRAFT_1919at 1929.302 kb on + strand, within EX28DRAFT_1919at 1929.303 kb on - strand, within EX28DRAFT_1919at 1929.553 kb on + strandat 1929.753 kb on + strand, within EX28DRAFT_1920at 1929.818 kb on - strand, within EX28DRAFT_1920at 1929.818 kb on - strand, within EX28DRAFT_1920at 1929.938 kb on - strand, within EX28DRAFT_1920at 1929.938 kb on - strand, within EX28DRAFT_1920

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,927,512 + EX28DRAFT_1916 0.66 -0.0
1,927,533 + EX28DRAFT_1916 0.71 -0.5
1,927,533 + EX28DRAFT_1916 0.71 +0.3
1,927,650 + -0.1
1,927,651 - -0.1
1,927,704 + +0.3
1,927,732 + EX28DRAFT_1917 0.10 +0.0
1,927,733 - EX28DRAFT_1917 0.10 -0.5
1,927,784 - EX28DRAFT_1917 0.17 -0.5
1,928,050 + EX28DRAFT_1917 0.50 -0.4
1,928,260 - EX28DRAFT_1917 0.76 -0.5
1,928,260 - EX28DRAFT_1917 0.76 -0.5
1,928,448 - +0.1
1,928,449 + -0.3
1,928,459 + -0.0
1,928,570 - EX28DRAFT_1918 0.18 +0.1
1,928,791 - EX28DRAFT_1918 0.56 +0.6
1,928,852 - EX28DRAFT_1918 0.66 +0.4
1,929,075 + -0.9
1,929,212 + EX28DRAFT_1919 0.31 -0.1
1,929,212 + EX28DRAFT_1919 0.31 -1.0
1,929,302 + EX28DRAFT_1919 0.49 +0.5
1,929,303 - EX28DRAFT_1919 0.49 -0.3
1,929,553 + +0.9
1,929,753 + EX28DRAFT_1920 0.13 -0.0
1,929,818 - EX28DRAFT_1920 0.18 -0.3
1,929,818 - EX28DRAFT_1920 0.18 +0.0
1,929,938 - EX28DRAFT_1920 0.27 -0.3
1,929,938 - EX28DRAFT_1920 0.27 +0.1

Or see this region's nucleotide sequence