Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1758

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1756 and EX28DRAFT_1757 overlap by 1 nucleotidesEX28DRAFT_1757 and EX28DRAFT_1758 are separated by 73 nucleotidesEX28DRAFT_1758 and EX28DRAFT_1759 overlap by 4 nucleotidesEX28DRAFT_1759 and EX28DRAFT_1760 overlap by 8 nucleotides EX28DRAFT_1756: EX28DRAFT_1756 - ABC-type uncharacterized transport system, permease component, at 1,771,373 to 1,772,902 _1756 EX28DRAFT_1757: EX28DRAFT_1757 - ABC-type uncharacterized transport system, ATPase component, at 1,772,902 to 1,773,522 _1757 EX28DRAFT_1758: EX28DRAFT_1758 - Rhodanese-related sulfurtransferase, at 1,773,596 to 1,774,903 _1758 EX28DRAFT_1759: EX28DRAFT_1759 - Phosphatidylglycerophosphate synthase, at 1,774,900 to 1,775,517 _1759 EX28DRAFT_1760: EX28DRAFT_1760 - Uncharacterized conserved protein, at 1,775,510 to 1,776,079 _1760 Position (kb) 1773 1774 1775Strain fitness (log2 ratio) -1 0 1at 1772.631 kb on + strand, within EX28DRAFT_1756at 1772.708 kb on + strand, within EX28DRAFT_1756at 1772.708 kb on + strand, within EX28DRAFT_1756at 1772.708 kb on + strand, within EX28DRAFT_1756at 1772.709 kb on - strand, within EX28DRAFT_1756at 1772.820 kb on + strandat 1772.912 kb on + strandat 1773.416 kb on + strand, within EX28DRAFT_1757at 1773.417 kb on - strand, within EX28DRAFT_1757at 1773.417 kb on - strand, within EX28DRAFT_1757at 1773.576 kb on + strandat 1773.577 kb on - strandat 1773.747 kb on - strand, within EX28DRAFT_1758at 1773.747 kb on - strand, within EX28DRAFT_1758at 1773.747 kb on - strand, within EX28DRAFT_1758at 1773.874 kb on + strand, within EX28DRAFT_1758at 1773.875 kb on - strand, within EX28DRAFT_1758at 1773.875 kb on - strand, within EX28DRAFT_1758at 1774.207 kb on + strand, within EX28DRAFT_1758at 1774.328 kb on + strand, within EX28DRAFT_1758at 1774.347 kb on + strand, within EX28DRAFT_1758at 1774.347 kb on + strand, within EX28DRAFT_1758at 1774.577 kb on + strand, within EX28DRAFT_1758at 1774.780 kb on + strandat 1774.784 kb on + strandat 1774.784 kb on + strandat 1774.785 kb on - strandat 1774.785 kb on - strandat 1774.785 kb on - strandat 1774.820 kb on + strandat 1774.928 kb on + strandat 1774.929 kb on - strandat 1774.996 kb on - strand, within EX28DRAFT_1759at 1775.069 kb on + strand, within EX28DRAFT_1759at 1775.069 kb on + strand, within EX28DRAFT_1759at 1775.240 kb on + strand, within EX28DRAFT_1759at 1775.240 kb on + strand, within EX28DRAFT_1759at 1775.241 kb on - strand, within EX28DRAFT_1759at 1775.451 kb on + strand, within EX28DRAFT_1759at 1775.576 kb on - strand, within EX28DRAFT_1760at 1775.779 kb on + strand, within EX28DRAFT_1760

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,772,631 + EX28DRAFT_1756 0.82 -0.4
1,772,708 + EX28DRAFT_1756 0.87 -0.2
1,772,708 + EX28DRAFT_1756 0.87 +1.2
1,772,708 + EX28DRAFT_1756 0.87 +0.1
1,772,709 - EX28DRAFT_1756 0.87 +0.0
1,772,820 + -0.5
1,772,912 + +0.9
1,773,416 + EX28DRAFT_1757 0.83 +0.1
1,773,417 - EX28DRAFT_1757 0.83 -1.4
1,773,417 - EX28DRAFT_1757 0.83 -0.2
1,773,576 + +0.1
1,773,577 - -0.7
1,773,747 - EX28DRAFT_1758 0.12 +0.2
1,773,747 - EX28DRAFT_1758 0.12 -0.3
1,773,747 - EX28DRAFT_1758 0.12 -0.1
1,773,874 + EX28DRAFT_1758 0.21 +0.1
1,773,875 - EX28DRAFT_1758 0.21 -0.4
1,773,875 - EX28DRAFT_1758 0.21 +0.1
1,774,207 + EX28DRAFT_1758 0.47 +0.5
1,774,328 + EX28DRAFT_1758 0.56 +0.2
1,774,347 + EX28DRAFT_1758 0.57 +0.6
1,774,347 + EX28DRAFT_1758 0.57 +0.6
1,774,577 + EX28DRAFT_1758 0.75 +1.1
1,774,780 + -0.6
1,774,784 + +0.4
1,774,784 + +0.2
1,774,785 - -0.9
1,774,785 - +0.6
1,774,785 - -0.6
1,774,820 + -0.3
1,774,928 + +0.3
1,774,929 - +0.3
1,774,996 - EX28DRAFT_1759 0.16 +1.7
1,775,069 + EX28DRAFT_1759 0.27 -0.2
1,775,069 + EX28DRAFT_1759 0.27 -0.2
1,775,240 + EX28DRAFT_1759 0.55 -0.6
1,775,240 + EX28DRAFT_1759 0.55 -0.6
1,775,241 - EX28DRAFT_1759 0.55 -0.1
1,775,451 + EX28DRAFT_1759 0.89 +0.0
1,775,576 - EX28DRAFT_1760 0.12 +0.2
1,775,779 + EX28DRAFT_1760 0.47 +0.3

Or see this region's nucleotide sequence