Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1464

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1463 and EX28DRAFT_1464 are separated by 93 nucleotidesEX28DRAFT_1464 and EX28DRAFT_1465 are separated by 40 nucleotides EX28DRAFT_1463: EX28DRAFT_1463 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family, at 1,475,089 to 1,477,527 _1463 EX28DRAFT_1464: EX28DRAFT_1464 - Uncharacterized component of anaerobic dehydrogenases, at 1,477,621 to 1,478,235 _1464 EX28DRAFT_1465: EX28DRAFT_1465 - Sulfate permease and related transporters (MFS superfamily), at 1,478,276 to 1,479,991 _1465 Position (kb) 1477 1478 1479Strain fitness (log2 ratio) -1 0 1 2 3at 1476.634 kb on + strand, within EX28DRAFT_1463at 1476.635 kb on - strand, within EX28DRAFT_1463at 1476.760 kb on - strand, within EX28DRAFT_1463at 1476.766 kb on - strand, within EX28DRAFT_1463at 1476.769 kb on + strand, within EX28DRAFT_1463at 1476.905 kb on - strand, within EX28DRAFT_1463at 1476.931 kb on + strand, within EX28DRAFT_1463at 1476.931 kb on + strand, within EX28DRAFT_1463at 1476.932 kb on - strand, within EX28DRAFT_1463at 1476.932 kb on - strand, within EX28DRAFT_1463at 1476.932 kb on - strand, within EX28DRAFT_1463at 1476.932 kb on - strand, within EX28DRAFT_1463at 1477.192 kb on - strand, within EX28DRAFT_1463at 1477.204 kb on + strand, within EX28DRAFT_1463at 1477.205 kb on - strand, within EX28DRAFT_1463at 1477.525 kb on + strandat 1477.526 kb on - strandat 1477.526 kb on - strandat 1477.553 kb on - strandat 1477.639 kb on - strandat 1477.684 kb on + strand, within EX28DRAFT_1464at 1477.848 kb on + strand, within EX28DRAFT_1464at 1478.172 kb on - strand, within EX28DRAFT_1464at 1478.277 kb on + strandat 1478.277 kb on + strandat 1478.278 kb on - strandat 1478.279 kb on + strandat 1478.280 kb on - strandat 1478.321 kb on - strandat 1478.337 kb on + strandat 1478.438 kb on - strandat 1478.466 kb on - strand, within EX28DRAFT_1465at 1478.474 kb on + strand, within EX28DRAFT_1465at 1478.474 kb on + strand, within EX28DRAFT_1465at 1478.503 kb on - strand, within EX28DRAFT_1465at 1478.546 kb on + strand, within EX28DRAFT_1465at 1478.546 kb on + strand, within EX28DRAFT_1465at 1478.546 kb on + strand, within EX28DRAFT_1465at 1478.547 kb on - strand, within EX28DRAFT_1465at 1478.628 kb on + strand, within EX28DRAFT_1465at 1478.653 kb on + strand, within EX28DRAFT_1465at 1478.665 kb on + strand, within EX28DRAFT_1465at 1478.672 kb on + strand, within EX28DRAFT_1465at 1478.673 kb on - strand, within EX28DRAFT_1465at 1478.708 kb on + strand, within EX28DRAFT_1465at 1478.708 kb on + strand, within EX28DRAFT_1465at 1478.842 kb on + strand, within EX28DRAFT_1465at 1478.842 kb on + strand, within EX28DRAFT_1465at 1478.843 kb on - strand, within EX28DRAFT_1465at 1478.899 kb on - strand, within EX28DRAFT_1465at 1478.899 kb on - strand, within EX28DRAFT_1465at 1478.899 kb on - strand, within EX28DRAFT_1465at 1478.916 kb on - strand, within EX28DRAFT_1465at 1478.916 kb on - strand, within EX28DRAFT_1465at 1478.916 kb on - strand, within EX28DRAFT_1465at 1478.916 kb on - strand, within EX28DRAFT_1465at 1478.933 kb on - strand, within EX28DRAFT_1465at 1479.086 kb on - strand, within EX28DRAFT_1465at 1479.086 kb on - strand, within EX28DRAFT_1465at 1479.128 kb on - strand, within EX28DRAFT_1465

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,476,634 + EX28DRAFT_1463 0.63 +0.3
1,476,635 - EX28DRAFT_1463 0.63 -0.2
1,476,760 - EX28DRAFT_1463 0.69 -0.2
1,476,766 - EX28DRAFT_1463 0.69 -0.2
1,476,769 + EX28DRAFT_1463 0.69 -0.1
1,476,905 - EX28DRAFT_1463 0.74 -0.5
1,476,931 + EX28DRAFT_1463 0.76 +0.4
1,476,931 + EX28DRAFT_1463 0.76 +0.2
1,476,932 - EX28DRAFT_1463 0.76 -0.2
1,476,932 - EX28DRAFT_1463 0.76 -0.6
1,476,932 - EX28DRAFT_1463 0.76 +0.1
1,476,932 - EX28DRAFT_1463 0.76 -0.3
1,477,192 - EX28DRAFT_1463 0.86 -0.3
1,477,204 + EX28DRAFT_1463 0.87 +0.4
1,477,205 - EX28DRAFT_1463 0.87 +0.4
1,477,525 + -0.3
1,477,526 - +0.3
1,477,526 - +0.2
1,477,553 - -1.2
1,477,639 - -0.6
1,477,684 + EX28DRAFT_1464 0.10 +0.4
1,477,848 + EX28DRAFT_1464 0.37 -1.3
1,478,172 - EX28DRAFT_1464 0.90 -0.4
1,478,277 + -0.6
1,478,277 + +0.4
1,478,278 - -0.0
1,478,279 + +0.6
1,478,280 - -0.3
1,478,321 - +0.3
1,478,337 + +1.9
1,478,438 - -1.1
1,478,466 - EX28DRAFT_1465 0.11 -0.8
1,478,474 + EX28DRAFT_1465 0.12 -0.7
1,478,474 + EX28DRAFT_1465 0.12 -0.2
1,478,503 - EX28DRAFT_1465 0.13 -1.3
1,478,546 + EX28DRAFT_1465 0.16 +0.2
1,478,546 + EX28DRAFT_1465 0.16 -0.4
1,478,546 + EX28DRAFT_1465 0.16 +1.2
1,478,547 - EX28DRAFT_1465 0.16 -0.2
1,478,628 + EX28DRAFT_1465 0.21 -1.0
1,478,653 + EX28DRAFT_1465 0.22 -0.1
1,478,665 + EX28DRAFT_1465 0.23 +0.5
1,478,672 + EX28DRAFT_1465 0.23 -0.0
1,478,673 - EX28DRAFT_1465 0.23 -0.2
1,478,708 + EX28DRAFT_1465 0.25 -0.1
1,478,708 + EX28DRAFT_1465 0.25 +0.2
1,478,842 + EX28DRAFT_1465 0.33 +0.3
1,478,842 + EX28DRAFT_1465 0.33 +0.2
1,478,843 - EX28DRAFT_1465 0.33 -0.3
1,478,899 - EX28DRAFT_1465 0.36 -0.8
1,478,899 - EX28DRAFT_1465 0.36 -0.2
1,478,899 - EX28DRAFT_1465 0.36 +0.2
1,478,916 - EX28DRAFT_1465 0.37 +3.2
1,478,916 - EX28DRAFT_1465 0.37 -0.4
1,478,916 - EX28DRAFT_1465 0.37 +0.9
1,478,916 - EX28DRAFT_1465 0.37 -0.3
1,478,933 - EX28DRAFT_1465 0.38 -0.6
1,479,086 - EX28DRAFT_1465 0.47 +1.1
1,479,086 - EX28DRAFT_1465 0.47 +0.3
1,479,128 - EX28DRAFT_1465 0.50 -1.1

Or see this region's nucleotide sequence