Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0736

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0734 and EX28DRAFT_0735 overlap by 286 nucleotidesEX28DRAFT_0735 and EX28DRAFT_0736 are separated by 219 nucleotidesEX28DRAFT_0736 and EX28DRAFT_0737 are separated by 65 nucleotidesEX28DRAFT_0737 and EX28DRAFT_0738 overlap by 4 nucleotides EX28DRAFT_0734: EX28DRAFT_0734 - RNA, at 732,189 to 732,651 _0734 EX28DRAFT_0735: EX28DRAFT_0735 - Cold shock proteins, at 732,366 to 732,575 _0735 EX28DRAFT_0736: EX28DRAFT_0736 - Cell division protein FtsI/penicillin-binding protein 2, at 732,795 to 734,513 _0736 EX28DRAFT_0737: EX28DRAFT_0737 - Methyltransferase domain, at 734,579 to 735,394 _0737 EX28DRAFT_0738: EX28DRAFT_0738 - Predicted membrane protein, at 735,391 to 735,957 _0738 Position (kb) 732 733 734 735Strain fitness (log2 ratio) -2 -1 0 1 2at 731.992 kb on - strandat 732.078 kb on + strandat 732.079 kb on - strandat 732.161 kb on + strandat 732.161 kb on + strandat 732.208 kb on - strandat 732.280 kb on + strand, within EX28DRAFT_0734at 732.282 kb on + strand, within EX28DRAFT_0734at 732.282 kb on + strand, within EX28DRAFT_0734at 732.282 kb on + strand, within EX28DRAFT_0734at 732.282 kb on + strand, within EX28DRAFT_0734at 732.282 kb on + strand, within EX28DRAFT_0734at 732.286 kb on - strand, within EX28DRAFT_0734at 732.300 kb on + strand, within EX28DRAFT_0734at 732.377 kb on + strandat 732.389 kb on + strandat 732.457 kb on + strandat 732.569 kb on + strandat 732.602 kb on - strandat 732.621 kb on + strandat 732.659 kb on - strandat 732.670 kb on + strandat 732.692 kb on - strandat 732.695 kb on - strandat 732.860 kb on - strandat 732.864 kb on - strandat 732.947 kb on + strandat 732.948 kb on - strandat 732.994 kb on + strand, within EX28DRAFT_0736at 732.995 kb on - strand, within EX28DRAFT_0736at 733.058 kb on + strand, within EX28DRAFT_0736at 733.186 kb on - strand, within EX28DRAFT_0736at 733.463 kb on + strand, within EX28DRAFT_0736at 733.464 kb on - strand, within EX28DRAFT_0736at 733.464 kb on - strand, within EX28DRAFT_0736at 733.474 kb on + strand, within EX28DRAFT_0736at 733.474 kb on + strand, within EX28DRAFT_0736at 733.474 kb on + strand, within EX28DRAFT_0736at 733.475 kb on - strand, within EX28DRAFT_0736at 733.475 kb on - strand, within EX28DRAFT_0736at 733.569 kb on - strand, within EX28DRAFT_0736at 733.588 kb on + strand, within EX28DRAFT_0736at 733.588 kb on + strand, within EX28DRAFT_0736at 733.677 kb on - strand, within EX28DRAFT_0736at 733.677 kb on - strand, within EX28DRAFT_0736at 733.774 kb on - strand, within EX28DRAFT_0736at 733.776 kb on - strand, within EX28DRAFT_0736at 733.794 kb on - strand, within EX28DRAFT_0736at 733.809 kb on + strand, within EX28DRAFT_0736at 733.823 kb on + strand, within EX28DRAFT_0736at 733.907 kb on + strand, within EX28DRAFT_0736at 733.990 kb on - strand, within EX28DRAFT_0736at 734.068 kb on - strand, within EX28DRAFT_0736at 734.068 kb on - strand, within EX28DRAFT_0736at 734.293 kb on - strand, within EX28DRAFT_0736at 734.304 kb on + strand, within EX28DRAFT_0736at 734.304 kb on + strand, within EX28DRAFT_0736at 734.313 kb on + strand, within EX28DRAFT_0736at 734.391 kb on + strandat 734.392 kb on - strandat 734.523 kb on + strandat 734.525 kb on + strandat 734.544 kb on + strandat 734.626 kb on + strandat 734.627 kb on - strandat 734.634 kb on - strandat 734.635 kb on + strandat 734.636 kb on - strandat 734.636 kb on - strandat 734.705 kb on - strand, within EX28DRAFT_0737at 734.778 kb on - strand, within EX28DRAFT_0737at 734.871 kb on - strand, within EX28DRAFT_0737at 734.871 kb on - strand, within EX28DRAFT_0737at 734.873 kb on + strand, within EX28DRAFT_0737at 734.873 kb on + strand, within EX28DRAFT_0737at 735.158 kb on + strand, within EX28DRAFT_0737at 735.159 kb on - strand, within EX28DRAFT_0737at 735.334 kb on - strandat 735.334 kb on - strandat 735.342 kb on + strandat 735.343 kb on - strandat 735.343 kb on - strandat 735.497 kb on - strand, within EX28DRAFT_0738

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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731,992 - +0.7
732,078 + -0.0
732,079 - -0.5
732,161 + +0.1
732,161 + -0.3
732,208 - -0.0
732,280 + EX28DRAFT_0734 0.20 +0.6
732,282 + EX28DRAFT_0734 0.20 +0.2
732,282 + EX28DRAFT_0734 0.20 +0.9
732,282 + EX28DRAFT_0734 0.20 +0.8
732,282 + EX28DRAFT_0734 0.20 +0.4
732,282 + EX28DRAFT_0734 0.20 -0.2
732,286 - EX28DRAFT_0734 0.21 -0.3
732,300 + EX28DRAFT_0734 0.24 +0.2
732,377 + +0.4
732,389 + -0.8
732,457 + -0.2
732,569 + +0.0
732,602 - +0.3
732,621 + +2.4
732,659 - -0.0
732,670 + +0.3
732,692 - -0.3
732,695 - +0.3
732,860 - -0.1
732,864 - -1.9
732,947 + -0.5
732,948 - -0.5
732,994 + EX28DRAFT_0736 0.12 +0.3
732,995 - EX28DRAFT_0736 0.12 -0.0
733,058 + EX28DRAFT_0736 0.15 +0.4
733,186 - EX28DRAFT_0736 0.23 -0.1
733,463 + EX28DRAFT_0736 0.39 -0.1
733,464 - EX28DRAFT_0736 0.39 -0.7
733,464 - EX28DRAFT_0736 0.39 +0.5
733,474 + EX28DRAFT_0736 0.39 +0.1
733,474 + EX28DRAFT_0736 0.39 +0.4
733,474 + EX28DRAFT_0736 0.39 +0.3
733,475 - EX28DRAFT_0736 0.40 -0.2
733,475 - EX28DRAFT_0736 0.40 +0.0
733,569 - EX28DRAFT_0736 0.45 -0.4
733,588 + EX28DRAFT_0736 0.46 +0.6
733,588 + EX28DRAFT_0736 0.46 -0.5
733,677 - EX28DRAFT_0736 0.51 +0.2
733,677 - EX28DRAFT_0736 0.51 +1.0
733,774 - EX28DRAFT_0736 0.57 +0.0
733,776 - EX28DRAFT_0736 0.57 -0.1
733,794 - EX28DRAFT_0736 0.58 -0.2
733,809 + EX28DRAFT_0736 0.59 +0.0
733,823 + EX28DRAFT_0736 0.60 +0.1
733,907 + EX28DRAFT_0736 0.65 +1.1
733,990 - EX28DRAFT_0736 0.70 -0.2
734,068 - EX28DRAFT_0736 0.74 -0.1
734,068 - EX28DRAFT_0736 0.74 +0.1
734,293 - EX28DRAFT_0736 0.87 +0.2
734,304 + EX28DRAFT_0736 0.88 +0.7
734,304 + EX28DRAFT_0736 0.88 +0.4
734,313 + EX28DRAFT_0736 0.88 +1.2
734,391 + -0.6
734,392 - -0.0
734,523 + +0.6
734,525 + +0.5
734,544 + +0.3
734,626 + +0.4
734,627 - -0.6
734,634 - +0.1
734,635 + -0.2
734,636 - -0.6
734,636 - -0.1
734,705 - EX28DRAFT_0737 0.15 -1.8
734,778 - EX28DRAFT_0737 0.24 -1.6
734,871 - EX28DRAFT_0737 0.36 +0.5
734,871 - EX28DRAFT_0737 0.36 +0.2
734,873 + EX28DRAFT_0737 0.36 -0.3
734,873 + EX28DRAFT_0737 0.36 +1.7
735,158 + EX28DRAFT_0737 0.71 +0.3
735,159 - EX28DRAFT_0737 0.71 -1.3
735,334 - -0.2
735,334 - -0.5
735,342 + +0.1
735,343 - +0.2
735,343 - +0.3
735,497 - EX28DRAFT_0738 0.19 -0.3

Or see this region's nucleotide sequence