Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0457

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0455 and EX28DRAFT_0456 are separated by 123 nucleotidesEX28DRAFT_0456 and EX28DRAFT_0457 are separated by 24 nucleotidesEX28DRAFT_0457 and EX28DRAFT_0458 are separated by 282 nucleotides EX28DRAFT_0455: EX28DRAFT_0455 - Phage integrase family, at 438,142 to 439,500 _0455 EX28DRAFT_0456: EX28DRAFT_0456 - hypothetical protein, at 439,624 to 439,882 _0456 EX28DRAFT_0457: EX28DRAFT_0457 - hypothetical protein, at 439,907 to 440,848 _0457 EX28DRAFT_0458: EX28DRAFT_0458 - Predicted ATP-dependent endonuclease of the OLD family, at 441,131 to 443,269 _0458 Position (kb) 439 440 441Strain fitness (log2 ratio) -3 -2 -1 0 1at 438.919 kb on + strand, within EX28DRAFT_0455at 439.007 kb on - strand, within EX28DRAFT_0455at 439.007 kb on - strand, within EX28DRAFT_0455at 439.007 kb on - strand, within EX28DRAFT_0455at 439.256 kb on + strand, within EX28DRAFT_0455at 439.257 kb on - strand, within EX28DRAFT_0455at 439.257 kb on - strand, within EX28DRAFT_0455at 439.288 kb on + strand, within EX28DRAFT_0455at 439.301 kb on - strand, within EX28DRAFT_0455at 439.336 kb on - strand, within EX28DRAFT_0455at 439.336 kb on - strand, within EX28DRAFT_0455at 439.336 kb on - strand, within EX28DRAFT_0455at 439.376 kb on + strandat 439.377 kb on - strandat 439.423 kb on - strandat 439.425 kb on + strandat 439.443 kb on + strandat 439.444 kb on - strandat 439.444 kb on - strandat 439.468 kb on + strandat 439.469 kb on - strandat 439.583 kb on - strandat 439.584 kb on + strandat 439.594 kb on - strandat 439.643 kb on - strandat 439.643 kb on - strandat 439.718 kb on + strand, within EX28DRAFT_0456at 439.718 kb on + strand, within EX28DRAFT_0456at 439.737 kb on + strand, within EX28DRAFT_0456at 439.737 kb on + strand, within EX28DRAFT_0456at 439.738 kb on - strand, within EX28DRAFT_0456at 439.767 kb on + strand, within EX28DRAFT_0456at 439.767 kb on + strand, within EX28DRAFT_0456at 439.768 kb on - strand, within EX28DRAFT_0456at 439.801 kb on - strand, within EX28DRAFT_0456at 439.807 kb on + strand, within EX28DRAFT_0456at 439.839 kb on - strand, within EX28DRAFT_0456at 439.873 kb on + strandat 439.883 kb on + strandat 439.935 kb on - strandat 439.935 kb on - strandat 439.938 kb on - strandat 439.938 kb on - strandat 439.972 kb on - strandat 440.064 kb on + strand, within EX28DRAFT_0457at 440.093 kb on - strand, within EX28DRAFT_0457at 440.280 kb on + strand, within EX28DRAFT_0457at 440.296 kb on - strand, within EX28DRAFT_0457at 440.349 kb on + strand, within EX28DRAFT_0457at 440.398 kb on + strand, within EX28DRAFT_0457at 440.399 kb on - strand, within EX28DRAFT_0457at 440.463 kb on + strand, within EX28DRAFT_0457at 440.464 kb on - strand, within EX28DRAFT_0457at 440.489 kb on + strand, within EX28DRAFT_0457at 440.490 kb on - strand, within EX28DRAFT_0457at 440.490 kb on - strand, within EX28DRAFT_0457at 440.490 kb on - strand, within EX28DRAFT_0457at 440.497 kb on - strand, within EX28DRAFT_0457at 440.497 kb on - strand, within EX28DRAFT_0457at 440.542 kb on + strand, within EX28DRAFT_0457at 440.545 kb on - strand, within EX28DRAFT_0457at 440.545 kb on - strand, within EX28DRAFT_0457at 440.555 kb on + strand, within EX28DRAFT_0457at 440.571 kb on + strand, within EX28DRAFT_0457at 440.578 kb on - strand, within EX28DRAFT_0457at 440.620 kb on + strand, within EX28DRAFT_0457at 440.686 kb on + strand, within EX28DRAFT_0457at 440.713 kb on - strand, within EX28DRAFT_0457at 440.804 kb on + strandat 440.805 kb on - strandat 440.829 kb on - strandat 440.829 kb on - strandat 440.867 kb on + strandat 440.868 kb on - strandat 440.894 kb on - strandat 440.902 kb on + strandat 440.905 kb on - strandat 440.908 kb on - strandat 440.919 kb on + strandat 440.919 kb on + strandat 440.919 kb on + strandat 440.919 kb on + strandat 440.921 kb on + strandat 440.922 kb on - strandat 440.928 kb on + strandat 441.077 kb on - strandat 441.136 kb on + strandat 441.136 kb on + strandat 441.137 kb on - strandat 441.137 kb on - strandat 441.162 kb on - strandat 441.162 kb on - strandat 441.162 kb on - strandat 441.242 kb on - strandat 441.257 kb on - strandat 441.268 kb on - strandat 441.303 kb on + strandat 441.451 kb on + strand, within EX28DRAFT_0458at 441.461 kb on + strand, within EX28DRAFT_0458at 441.461 kb on + strand, within EX28DRAFT_0458at 441.462 kb on - strand, within EX28DRAFT_0458at 441.462 kb on - strand, within EX28DRAFT_0458at 441.462 kb on - strand, within EX28DRAFT_0458at 441.482 kb on - strand, within EX28DRAFT_0458at 441.490 kb on + strand, within EX28DRAFT_0458at 441.490 kb on + strand, within EX28DRAFT_0458at 441.492 kb on + strand, within EX28DRAFT_0458at 441.492 kb on + strand, within EX28DRAFT_0458at 441.493 kb on - strand, within EX28DRAFT_0458at 441.493 kb on - strand, within EX28DRAFT_0458at 441.573 kb on - strand, within EX28DRAFT_0458at 441.614 kb on - strand, within EX28DRAFT_0458at 441.614 kb on - strand, within EX28DRAFT_0458at 441.637 kb on - strand, within EX28DRAFT_0458at 441.658 kb on + strand, within EX28DRAFT_0458at 441.658 kb on + strand, within EX28DRAFT_0458at 441.659 kb on - strand, within EX28DRAFT_0458at 441.793 kb on + strand, within EX28DRAFT_0458at 441.794 kb on - strand, within EX28DRAFT_0458at 441.802 kb on - strand, within EX28DRAFT_0458at 441.814 kb on + strand, within EX28DRAFT_0458at 441.815 kb on - strand, within EX28DRAFT_0458at 441.815 kb on - strand, within EX28DRAFT_0458

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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438,919 + EX28DRAFT_0455 0.57 -0.1
439,007 - EX28DRAFT_0455 0.64 -0.9
439,007 - EX28DRAFT_0455 0.64 +0.1
439,007 - EX28DRAFT_0455 0.64 -0.0
439,256 + EX28DRAFT_0455 0.82 +0.9
439,257 - EX28DRAFT_0455 0.82 +0.1
439,257 - EX28DRAFT_0455 0.82 +0.4
439,288 + EX28DRAFT_0455 0.84 -0.0
439,301 - EX28DRAFT_0455 0.85 +1.6
439,336 - EX28DRAFT_0455 0.88 -0.4
439,336 - EX28DRAFT_0455 0.88 -0.4
439,336 - EX28DRAFT_0455 0.88 -0.2
439,376 + +0.2
439,377 - +0.1
439,423 - -0.4
439,425 + -0.4
439,443 + +0.3
439,444 - -1.4
439,444 - -0.1
439,468 + -0.4
439,469 - -0.2
439,583 - -2.0
439,584 + +0.3
439,594 - +0.0
439,643 - +1.1
439,643 - +0.3
439,718 + EX28DRAFT_0456 0.36 -0.1
439,718 + EX28DRAFT_0456 0.36 +0.4
439,737 + EX28DRAFT_0456 0.44 +0.5
439,737 + EX28DRAFT_0456 0.44 +0.1
439,738 - EX28DRAFT_0456 0.44 +0.5
439,767 + EX28DRAFT_0456 0.55 -0.2
439,767 + EX28DRAFT_0456 0.55 +0.1
439,768 - EX28DRAFT_0456 0.56 -0.4
439,801 - EX28DRAFT_0456 0.68 +0.4
439,807 + EX28DRAFT_0456 0.71 -0.4
439,839 - EX28DRAFT_0456 0.83 +0.9
439,873 + +0.1
439,883 + +0.2
439,935 - +1.2
439,935 - +1.0
439,938 - +0.3
439,938 - -0.3
439,972 - -0.1
440,064 + EX28DRAFT_0457 0.17 +0.2
440,093 - EX28DRAFT_0457 0.20 -1.4
440,280 + EX28DRAFT_0457 0.40 -0.6
440,296 - EX28DRAFT_0457 0.41 +1.2
440,349 + EX28DRAFT_0457 0.47 +0.3
440,398 + EX28DRAFT_0457 0.52 +0.8
440,399 - EX28DRAFT_0457 0.52 -0.5
440,463 + EX28DRAFT_0457 0.59 +0.1
440,464 - EX28DRAFT_0457 0.59 -0.8
440,489 + EX28DRAFT_0457 0.62 -0.1
440,490 - EX28DRAFT_0457 0.62 +0.2
440,490 - EX28DRAFT_0457 0.62 +0.3
440,490 - EX28DRAFT_0457 0.62 +0.2
440,497 - EX28DRAFT_0457 0.63 -0.7
440,497 - EX28DRAFT_0457 0.63 -0.1
440,542 + EX28DRAFT_0457 0.67 -0.1
440,545 - EX28DRAFT_0457 0.68 +0.5
440,545 - EX28DRAFT_0457 0.68 +0.1
440,555 + EX28DRAFT_0457 0.69 +0.1
440,571 + EX28DRAFT_0457 0.70 +0.1
440,578 - EX28DRAFT_0457 0.71 -0.9
440,620 + EX28DRAFT_0457 0.76 -0.6
440,686 + EX28DRAFT_0457 0.83 -0.1
440,713 - EX28DRAFT_0457 0.86 +0.2
440,804 + +0.3
440,805 - +0.0
440,829 - +0.2
440,829 - -0.4
440,867 + -0.8
440,868 - -1.0
440,894 - -0.3
440,902 + +0.2
440,905 - -0.1
440,908 - +0.0
440,919 + -0.2
440,919 + -0.1
440,919 + -0.1
440,919 + +0.1
440,921 + +0.1
440,922 - +0.6
440,928 + -0.1
441,077 - +0.6
441,136 + -3.0
441,136 + +0.3
441,137 - +0.9
441,137 - +0.2
441,162 - -0.2
441,162 - +0.1
441,162 - -0.3
441,242 - +0.9
441,257 - -0.1
441,268 - +0.2
441,303 + +0.2
441,451 + EX28DRAFT_0458 0.15 +0.4
441,461 + EX28DRAFT_0458 0.15 -2.0
441,461 + EX28DRAFT_0458 0.15 -0.3
441,462 - EX28DRAFT_0458 0.15 +0.2
441,462 - EX28DRAFT_0458 0.15 +0.2
441,462 - EX28DRAFT_0458 0.15 -0.5
441,482 - EX28DRAFT_0458 0.16 -0.5
441,490 + EX28DRAFT_0458 0.17 -0.3
441,490 + EX28DRAFT_0458 0.17 +0.3
441,492 + EX28DRAFT_0458 0.17 -0.4
441,492 + EX28DRAFT_0458 0.17 +1.3
441,493 - EX28DRAFT_0458 0.17 +0.4
441,493 - EX28DRAFT_0458 0.17 -1.1
441,573 - EX28DRAFT_0458 0.21 +0.1
441,614 - EX28DRAFT_0458 0.23 +0.2
441,614 - EX28DRAFT_0458 0.23 -0.1
441,637 - EX28DRAFT_0458 0.24 +0.5
441,658 + EX28DRAFT_0458 0.25 -0.6
441,658 + EX28DRAFT_0458 0.25 +1.6
441,659 - EX28DRAFT_0458 0.25 +0.7
441,793 + EX28DRAFT_0458 0.31 -0.4
441,794 - EX28DRAFT_0458 0.31 +0.0
441,802 - EX28DRAFT_0458 0.31 +1.5
441,814 + EX28DRAFT_0458 0.32 +0.1
441,815 - EX28DRAFT_0458 0.32 +0.6
441,815 - EX28DRAFT_0458 0.32 -1.7

Or see this region's nucleotide sequence