Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0267

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0266 and EX28DRAFT_0267 are separated by 315 nucleotidesEX28DRAFT_0267 and EX28DRAFT_0268 are separated by 44 nucleotides EX28DRAFT_0266: EX28DRAFT_0266 - Formate/nitrite family of transporters, at 226,997 to 227,926 _0266 EX28DRAFT_0267: EX28DRAFT_0267 - Surface lipoprotein, at 228,242 to 228,994 _0267 EX28DRAFT_0268: EX28DRAFT_0268 - Long-chain fatty acid transport protein, at 229,039 to 230,361 _0268 Position (kb) 228 229Strain fitness (log2 ratio) -2 -1 0 1 2 3at 227.267 kb on + strand, within EX28DRAFT_0266at 227.267 kb on + strand, within EX28DRAFT_0266at 227.268 kb on - strand, within EX28DRAFT_0266at 227.382 kb on - strand, within EX28DRAFT_0266at 227.440 kb on - strand, within EX28DRAFT_0266at 227.440 kb on - strand, within EX28DRAFT_0266at 227.440 kb on - strand, within EX28DRAFT_0266at 227.476 kb on + strand, within EX28DRAFT_0266at 227.608 kb on + strand, within EX28DRAFT_0266at 227.609 kb on - strand, within EX28DRAFT_0266at 227.609 kb on - strand, within EX28DRAFT_0266at 227.657 kb on + strand, within EX28DRAFT_0266at 227.658 kb on - strand, within EX28DRAFT_0266at 227.786 kb on + strand, within EX28DRAFT_0266at 227.786 kb on + strand, within EX28DRAFT_0266at 227.787 kb on - strand, within EX28DRAFT_0266at 227.787 kb on - strand, within EX28DRAFT_0266at 227.788 kb on + strand, within EX28DRAFT_0266at 227.788 kb on + strand, within EX28DRAFT_0266at 227.789 kb on - strand, within EX28DRAFT_0266at 227.915 kb on + strandat 227.926 kb on + strandat 227.926 kb on + strandat 227.926 kb on + strandat 227.927 kb on - strandat 227.997 kb on + strandat 228.026 kb on + strandat 228.027 kb on - strandat 228.131 kb on + strandat 228.132 kb on - strandat 228.132 kb on - strandat 228.153 kb on + strandat 228.222 kb on + strandat 228.237 kb on + strandat 228.237 kb on + strandat 228.238 kb on - strandat 228.241 kb on + strandat 228.241 kb on + strandat 228.242 kb on - strandat 228.356 kb on + strand, within EX28DRAFT_0267at 228.356 kb on + strand, within EX28DRAFT_0267at 228.356 kb on + strand, within EX28DRAFT_0267at 228.368 kb on + strand, within EX28DRAFT_0267at 228.386 kb on + strand, within EX28DRAFT_0267at 228.387 kb on - strand, within EX28DRAFT_0267at 228.387 kb on - strand, within EX28DRAFT_0267at 228.451 kb on - strand, within EX28DRAFT_0267at 228.455 kb on - strand, within EX28DRAFT_0267at 228.498 kb on - strand, within EX28DRAFT_0267at 228.580 kb on + strand, within EX28DRAFT_0267at 228.688 kb on - strand, within EX28DRAFT_0267at 228.696 kb on - strand, within EX28DRAFT_0267at 228.700 kb on + strand, within EX28DRAFT_0267at 228.871 kb on + strand, within EX28DRAFT_0267at 228.871 kb on + strand, within EX28DRAFT_0267at 228.871 kb on + strand, within EX28DRAFT_0267at 228.876 kb on + strand, within EX28DRAFT_0267at 228.876 kb on + strand, within EX28DRAFT_0267at 228.876 kb on + strand, within EX28DRAFT_0267at 228.877 kb on - strand, within EX28DRAFT_0267at 228.887 kb on + strand, within EX28DRAFT_0267at 228.973 kb on - strandat 229.041 kb on - strandat 229.049 kb on + strandat 229.068 kb on - strandat 229.080 kb on + strandat 229.101 kb on - strandat 229.101 kb on - strandat 229.137 kb on + strandat 229.137 kb on + strandat 229.137 kb on + strandat 229.137 kb on + strandat 229.137 kb on + strandat 229.138 kb on + strandat 229.138 kb on - strandat 229.138 kb on - strandat 229.138 kb on - strandat 229.138 kb on - strandat 229.139 kb on + strandat 229.139 kb on + strandat 229.139 kb on + strandat 229.139 kb on + strandat 229.140 kb on - strandat 229.140 kb on - strandat 229.140 kb on - strandat 229.140 kb on - strandat 229.158 kb on + strandat 229.159 kb on - strandat 229.159 kb on - strandat 229.181 kb on + strand, within EX28DRAFT_0268at 229.230 kb on + strand, within EX28DRAFT_0268at 229.303 kb on - strand, within EX28DRAFT_0268at 229.304 kb on + strand, within EX28DRAFT_0268at 229.304 kb on + strand, within EX28DRAFT_0268at 229.305 kb on - strand, within EX28DRAFT_0268at 229.307 kb on + strand, within EX28DRAFT_0268at 229.307 kb on + strand, within EX28DRAFT_0268at 229.308 kb on - strand, within EX28DRAFT_0268at 229.420 kb on - strand, within EX28DRAFT_0268at 229.422 kb on - strand, within EX28DRAFT_0268at 229.422 kb on - strand, within EX28DRAFT_0268at 229.434 kb on - strand, within EX28DRAFT_0268at 229.464 kb on + strand, within EX28DRAFT_0268at 229.464 kb on + strand, within EX28DRAFT_0268at 229.465 kb on - strand, within EX28DRAFT_0268at 229.467 kb on - strand, within EX28DRAFT_0268at 229.493 kb on - strand, within EX28DRAFT_0268at 229.569 kb on + strand, within EX28DRAFT_0268at 229.570 kb on - strand, within EX28DRAFT_0268at 229.571 kb on + strand, within EX28DRAFT_0268at 229.572 kb on - strand, within EX28DRAFT_0268at 229.572 kb on - strand, within EX28DRAFT_0268at 229.572 kb on - strand, within EX28DRAFT_0268at 229.636 kb on - strand, within EX28DRAFT_0268at 229.667 kb on + strand, within EX28DRAFT_0268at 229.834 kb on - strand, within EX28DRAFT_0268at 229.834 kb on - strand, within EX28DRAFT_0268at 229.838 kb on + strand, within EX28DRAFT_0268at 229.839 kb on - strand, within EX28DRAFT_0268at 229.983 kb on - strand, within EX28DRAFT_0268at 229.983 kb on - strand, within EX28DRAFT_0268at 229.983 kb on - strand, within EX28DRAFT_0268at 229.983 kb on - strand, within EX28DRAFT_0268at 229.986 kb on + strand, within EX28DRAFT_0268

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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227,267 + EX28DRAFT_0266 0.29 +0.6
227,267 + EX28DRAFT_0266 0.29 +2.1
227,268 - EX28DRAFT_0266 0.29 +0.6
227,382 - EX28DRAFT_0266 0.41 +0.2
227,440 - EX28DRAFT_0266 0.48 +0.0
227,440 - EX28DRAFT_0266 0.48 -0.3
227,440 - EX28DRAFT_0266 0.48 +0.2
227,476 + EX28DRAFT_0266 0.52 -2.3
227,608 + EX28DRAFT_0266 0.66 -0.1
227,609 - EX28DRAFT_0266 0.66 -0.2
227,609 - EX28DRAFT_0266 0.66 -0.5
227,657 + EX28DRAFT_0266 0.71 +0.7
227,658 - EX28DRAFT_0266 0.71 -0.3
227,786 + EX28DRAFT_0266 0.85 +0.3
227,786 + EX28DRAFT_0266 0.85 +0.4
227,787 - EX28DRAFT_0266 0.85 +0.4
227,787 - EX28DRAFT_0266 0.85 +0.4
227,788 + EX28DRAFT_0266 0.85 +0.6
227,788 + EX28DRAFT_0266 0.85 +0.3
227,789 - EX28DRAFT_0266 0.85 -1.6
227,915 + -0.3
227,926 + +0.3
227,926 + -0.2
227,926 + +1.0
227,927 - -0.4
227,997 + -0.7
228,026 + -0.4
228,027 - -0.3
228,131 + +0.1
228,132 - -0.7
228,132 - +0.1
228,153 + +0.1
228,222 + +1.0
228,237 + +3.6
228,237 + -0.5
228,238 - -1.0
228,241 + +0.2
228,241 + +0.5
228,242 - +0.3
228,356 + EX28DRAFT_0267 0.15 +0.3
228,356 + EX28DRAFT_0267 0.15 +0.3
228,356 + EX28DRAFT_0267 0.15 +0.4
228,368 + EX28DRAFT_0267 0.17 +1.2
228,386 + EX28DRAFT_0267 0.19 -0.9
228,387 - EX28DRAFT_0267 0.19 +0.1
228,387 - EX28DRAFT_0267 0.19 +0.9
228,451 - EX28DRAFT_0267 0.28 -1.1
228,455 - EX28DRAFT_0267 0.28 +0.3
228,498 - EX28DRAFT_0267 0.34 +0.0
228,580 + EX28DRAFT_0267 0.45 +0.1
228,688 - EX28DRAFT_0267 0.59 -0.2
228,696 - EX28DRAFT_0267 0.60 +0.6
228,700 + EX28DRAFT_0267 0.61 +0.1
228,871 + EX28DRAFT_0267 0.84 +0.1
228,871 + EX28DRAFT_0267 0.84 -0.1
228,871 + EX28DRAFT_0267 0.84 +0.4
228,876 + EX28DRAFT_0267 0.84 -0.5
228,876 + EX28DRAFT_0267 0.84 +1.1
228,876 + EX28DRAFT_0267 0.84 +0.0
228,877 - EX28DRAFT_0267 0.84 +1.3
228,887 + EX28DRAFT_0267 0.86 +0.4
228,973 - +0.8
229,041 - -0.5
229,049 + +0.1
229,068 - -1.1
229,080 + +0.4
229,101 - +0.2
229,101 - +0.3
229,137 + +1.6
229,137 + -0.5
229,137 + -0.7
229,137 + +0.2
229,137 + +0.3
229,138 + -0.1
229,138 - +0.1
229,138 - +2.1
229,138 - -0.3
229,138 - -0.4
229,139 + +1.6
229,139 + +0.1
229,139 + +1.9
229,139 + -0.3
229,140 - +1.3
229,140 - +0.5
229,140 - +0.2
229,140 - -0.1
229,158 + +0.6
229,159 - +0.7
229,159 - -0.3
229,181 + EX28DRAFT_0268 0.11 +1.4
229,230 + EX28DRAFT_0268 0.14 -0.2
229,303 - EX28DRAFT_0268 0.20 +0.1
229,304 + EX28DRAFT_0268 0.20 +0.5
229,304 + EX28DRAFT_0268 0.20 -0.6
229,305 - EX28DRAFT_0268 0.20 +1.3
229,307 + EX28DRAFT_0268 0.20 +0.7
229,307 + EX28DRAFT_0268 0.20 -0.3
229,308 - EX28DRAFT_0268 0.20 +0.4
229,420 - EX28DRAFT_0268 0.29 -0.2
229,422 - EX28DRAFT_0268 0.29 +0.1
229,422 - EX28DRAFT_0268 0.29 -0.1
229,434 - EX28DRAFT_0268 0.30 +0.8
229,464 + EX28DRAFT_0268 0.32 +0.3
229,464 + EX28DRAFT_0268 0.32 -0.0
229,465 - EX28DRAFT_0268 0.32 +0.6
229,467 - EX28DRAFT_0268 0.32 +0.0
229,493 - EX28DRAFT_0268 0.34 -0.5
229,569 + EX28DRAFT_0268 0.40 -1.0
229,570 - EX28DRAFT_0268 0.40 -0.3
229,571 + EX28DRAFT_0268 0.40 -1.0
229,572 - EX28DRAFT_0268 0.40 -0.1
229,572 - EX28DRAFT_0268 0.40 +0.4
229,572 - EX28DRAFT_0268 0.40 +0.1
229,636 - EX28DRAFT_0268 0.45 +0.7
229,667 + EX28DRAFT_0268 0.47 -0.1
229,834 - EX28DRAFT_0268 0.60 +0.1
229,834 - EX28DRAFT_0268 0.60 -0.5
229,838 + EX28DRAFT_0268 0.60 -0.0
229,839 - EX28DRAFT_0268 0.60 +0.7
229,983 - EX28DRAFT_0268 0.71 +0.2
229,983 - EX28DRAFT_0268 0.71 +0.4
229,983 - EX28DRAFT_0268 0.71 +0.3
229,983 - EX28DRAFT_0268 0.71 +0.1
229,986 + EX28DRAFT_0268 0.72 +0.6

Or see this region's nucleotide sequence