Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0232

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0231 and EX28DRAFT_0232 are separated by 348 nucleotidesEX28DRAFT_0232 and EX28DRAFT_0233 are separated by 33 nucleotidesEX28DRAFT_0233 and EX28DRAFT_0234 are separated by 127 nucleotides EX28DRAFT_0231: EX28DRAFT_0231 - nucleoside transporter, at 181,712 to 182,899 _0231 EX28DRAFT_0232: EX28DRAFT_0232 - NRAMP (natural resistance-associated macrophage protein) metal ion transporters, at 183,248 to 184,486 _0232 EX28DRAFT_0233: EX28DRAFT_0233 - Protein of unknown function (DUF2502), at 184,520 to 184,876 _0233 EX28DRAFT_0234: EX28DRAFT_0234 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 185,004 to 186,002 _0234 Position (kb) 183 184 185Strain fitness (log2 ratio) -1 0 1 2at 182.322 kb on + strand, within EX28DRAFT_0231at 182.322 kb on + strand, within EX28DRAFT_0231at 182.322 kb on + strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.344 kb on + strand, within EX28DRAFT_0231at 182.346 kb on + strand, within EX28DRAFT_0231at 182.346 kb on + strand, within EX28DRAFT_0231at 182.346 kb on + strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.360 kb on - strand, within EX28DRAFT_0231at 182.400 kb on + strand, within EX28DRAFT_0231at 182.401 kb on - strand, within EX28DRAFT_0231at 182.432 kb on - strand, within EX28DRAFT_0231at 182.438 kb on - strand, within EX28DRAFT_0231at 182.438 kb on - strand, within EX28DRAFT_0231at 182.439 kb on + strand, within EX28DRAFT_0231at 182.899 kb on + strandat 182.899 kb on + strandat 182.988 kb on + strandat 183.042 kb on + strandat 183.062 kb on + strandat 183.063 kb on - strandat 183.113 kb on - strandat 183.113 kb on - strandat 183.143 kb on + strandat 183.168 kb on + strandat 183.232 kb on + strandat 183.341 kb on + strandat 183.342 kb on - strandat 183.342 kb on - strandat 183.356 kb on - strandat 183.398 kb on - strand, within EX28DRAFT_0232at 183.398 kb on - strand, within EX28DRAFT_0232at 183.802 kb on + strand, within EX28DRAFT_0232at 183.810 kb on + strand, within EX28DRAFT_0232at 183.942 kb on - strand, within EX28DRAFT_0232at 184.210 kb on + strand, within EX28DRAFT_0232at 184.484 kb on + strandat 184.522 kb on - strandat 184.642 kb on + strand, within EX28DRAFT_0233at 184.642 kb on + strand, within EX28DRAFT_0233at 184.644 kb on + strand, within EX28DRAFT_0233at 184.645 kb on - strand, within EX28DRAFT_0233at 184.750 kb on - strand, within EX28DRAFT_0233at 184.759 kb on - strand, within EX28DRAFT_0233at 184.787 kb on + strand, within EX28DRAFT_0233at 184.848 kb on - strandat 184.876 kb on + strandat 184.925 kb on + strandat 184.928 kb on + strandat 184.929 kb on - strandat 184.939 kb on - strandat 185.027 kb on + strandat 185.106 kb on - strand, within EX28DRAFT_0234at 185.146 kb on - strand, within EX28DRAFT_0234at 185.148 kb on + strand, within EX28DRAFT_0234at 185.214 kb on + strand, within EX28DRAFT_0234at 185.215 kb on - strand, within EX28DRAFT_0234at 185.348 kb on + strand, within EX28DRAFT_0234at 185.348 kb on + strand, within EX28DRAFT_0234at 185.462 kb on + strand, within EX28DRAFT_0234

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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182,322 + EX28DRAFT_0231 0.51 +0.0
182,322 + EX28DRAFT_0231 0.51 -0.0
182,322 + EX28DRAFT_0231 0.51 -0.4
182,323 - EX28DRAFT_0231 0.51 -0.3
182,323 - EX28DRAFT_0231 0.51 -0.1
182,323 - EX28DRAFT_0231 0.51 +0.4
182,323 - EX28DRAFT_0231 0.51 +0.8
182,323 - EX28DRAFT_0231 0.51 +0.2
182,323 - EX28DRAFT_0231 0.51 +2.1
182,344 + EX28DRAFT_0231 0.53 -0.3
182,346 + EX28DRAFT_0231 0.53 +1.5
182,346 + EX28DRAFT_0231 0.53 +0.1
182,346 + EX28DRAFT_0231 0.53 +0.5
182,347 - EX28DRAFT_0231 0.53 +0.8
182,347 - EX28DRAFT_0231 0.53 +0.7
182,347 - EX28DRAFT_0231 0.53 +0.7
182,347 - EX28DRAFT_0231 0.53 +0.5
182,347 - EX28DRAFT_0231 0.53 -0.1
182,347 - EX28DRAFT_0231 0.53 +1.0
182,360 - EX28DRAFT_0231 0.55 +0.3
182,400 + EX28DRAFT_0231 0.58 -0.1
182,401 - EX28DRAFT_0231 0.58 -0.2
182,432 - EX28DRAFT_0231 0.61 +1.1
182,438 - EX28DRAFT_0231 0.61 -1.2
182,438 - EX28DRAFT_0231 0.61 +0.4
182,439 + EX28DRAFT_0231 0.61 +0.2
182,899 + +0.1
182,899 + +0.9
182,988 + +0.3
183,042 + -0.1
183,062 + +0.7
183,063 - +0.1
183,113 - +0.2
183,113 - -0.5
183,143 + +0.2
183,168 + +0.0
183,232 + -0.0
183,341 + +0.0
183,342 - -0.9
183,342 - +1.1
183,356 - -0.0
183,398 - EX28DRAFT_0232 0.12 -0.7
183,398 - EX28DRAFT_0232 0.12 -0.2
183,802 + EX28DRAFT_0232 0.45 +0.3
183,810 + EX28DRAFT_0232 0.45 -0.7
183,942 - EX28DRAFT_0232 0.56 +0.0
184,210 + EX28DRAFT_0232 0.78 -0.1
184,484 + +0.5
184,522 - -0.1
184,642 + EX28DRAFT_0233 0.34 -0.4
184,642 + EX28DRAFT_0233 0.34 -0.9
184,644 + EX28DRAFT_0233 0.35 -1.2
184,645 - EX28DRAFT_0233 0.35 +0.6
184,750 - EX28DRAFT_0233 0.64 -0.0
184,759 - EX28DRAFT_0233 0.67 +0.4
184,787 + EX28DRAFT_0233 0.75 +0.7
184,848 - +0.4
184,876 + +0.1
184,925 + +0.6
184,928 + -0.4
184,929 - +0.1
184,939 - -0.2
185,027 + +0.5
185,106 - EX28DRAFT_0234 0.10 -0.5
185,146 - EX28DRAFT_0234 0.14 -0.1
185,148 + EX28DRAFT_0234 0.14 +0.7
185,214 + EX28DRAFT_0234 0.21 -0.1
185,215 - EX28DRAFT_0234 0.21 +0.5
185,348 + EX28DRAFT_0234 0.34 -0.3
185,348 + EX28DRAFT_0234 0.34 -0.0
185,462 + EX28DRAFT_0234 0.46 -1.1

Or see this region's nucleotide sequence