Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS18110 and ABIE41_RS18115 are separated by 209 nucleotides ABIE41_RS18115 and ABIE41_RS18120 are separated by 2 nucleotides ABIE41_RS18120 and ABIE41_RS18125 are separated by 5 nucleotides
ABIE41_RS18110: ABIE41_RS18110 - polyphosphate kinase 2, at 3,729,663 to 3,730,697
_RS18110
ABIE41_RS18115: ABIE41_RS18115 - urea ABC transporter ATP-binding subunit UrtE, at 3,730,907 to 3,731,602
_RS18115
ABIE41_RS18120: ABIE41_RS18120 - urea ABC transporter ATP-binding protein UrtD, at 3,731,605 to 3,732,369
_RS18120
ABIE41_RS18125: ABIE41_RS18125 - urea ABC transporter permease subunit UrtC, at 3,732,375 to 3,733,514
_RS18125
Position (kb)
3730
3731
3732 Strain fitness (log2 ratio)
-2
-1
0
1 at 3729.998 kb on + strand, within ABIE41_RS18110 at 3730.091 kb on - strand, within ABIE41_RS18110 at 3730.141 kb on + strand, within ABIE41_RS18110 at 3730.195 kb on + strand, within ABIE41_RS18110 at 3730.196 kb on - strand, within ABIE41_RS18110 at 3730.207 kb on + strand, within ABIE41_RS18110 at 3730.208 kb on - strand, within ABIE41_RS18110 at 3730.208 kb on - strand, within ABIE41_RS18110 at 3730.399 kb on + strand, within ABIE41_RS18110 at 3730.417 kb on + strand, within ABIE41_RS18110 at 3730.417 kb on + strand, within ABIE41_RS18110 at 3730.418 kb on - strand, within ABIE41_RS18110 at 3730.418 kb on - strand, within ABIE41_RS18110 at 3730.418 kb on - strand, within ABIE41_RS18110 at 3730.418 kb on - strand, within ABIE41_RS18110 at 3730.438 kb on + strand, within ABIE41_RS18110 at 3730.438 kb on + strand, within ABIE41_RS18110 at 3730.439 kb on - strand, within ABIE41_RS18110 at 3730.444 kb on + strand, within ABIE41_RS18110 at 3731.028 kb on + strand, within ABIE41_RS18115 at 3731.029 kb on - strand, within ABIE41_RS18115 at 3731.029 kb on - strand, within ABIE41_RS18115 at 3731.029 kb on - strand, within ABIE41_RS18115 at 3731.073 kb on + strand, within ABIE41_RS18115 at 3731.074 kb on - strand, within ABIE41_RS18115 at 3731.074 kb on - strand, within ABIE41_RS18115 at 3731.092 kb on + strand, within ABIE41_RS18115 at 3731.249 kb on + strand, within ABIE41_RS18115 at 3731.249 kb on + strand, within ABIE41_RS18115 at 3731.250 kb on - strand, within ABIE41_RS18115 at 3731.250 kb on - strand, within ABIE41_RS18115 at 3731.250 kb on - strand, within ABIE41_RS18115 at 3731.274 kb on + strand, within ABIE41_RS18115 at 3731.274 kb on + strand, within ABIE41_RS18115 at 3731.274 kb on + strand, within ABIE41_RS18115 at 3731.274 kb on + strand, within ABIE41_RS18115 at 3731.274 kb on + strand, within ABIE41_RS18115 at 3731.275 kb on - strand, within ABIE41_RS18115 at 3731.275 kb on - strand, within ABIE41_RS18115 at 3731.275 kb on - strand, within ABIE41_RS18115 at 3731.571 kb on + strand at 3731.618 kb on + strand at 3731.619 kb on - strand at 3731.730 kb on + strand, within ABIE41_RS18120 at 3732.326 kb on + strand at 3732.326 kb on + strand at 3732.327 kb on - strand at 3732.327 kb on - strand at 3732.327 kb on - strand at 3732.327 kb on - strand at 3732.472 kb on + strand at 3732.556 kb on + strand, within ABIE41_RS18125 at 3732.556 kb on + strand, within ABIE41_RS18125
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 3,729,998 + ABIE41_RS18110 0.32 -0.4 3,730,091 - ABIE41_RS18110 0.41 -0.5 3,730,141 + ABIE41_RS18110 0.46 -0.4 3,730,195 + ABIE41_RS18110 0.51 -1.1 3,730,196 - ABIE41_RS18110 0.51 -0.6 3,730,207 + ABIE41_RS18110 0.53 +0.3 3,730,208 - ABIE41_RS18110 0.53 -0.1 3,730,208 - ABIE41_RS18110 0.53 -0.2 3,730,399 + ABIE41_RS18110 0.71 +0.3 3,730,417 + ABIE41_RS18110 0.73 -0.6 3,730,417 + ABIE41_RS18110 0.73 -0.5 3,730,418 - ABIE41_RS18110 0.73 -2.0 3,730,418 - ABIE41_RS18110 0.73 -1.4 3,730,418 - ABIE41_RS18110 0.73 -0.1 3,730,418 - ABIE41_RS18110 0.73 -1.2 3,730,438 + ABIE41_RS18110 0.75 -0.3 3,730,438 + ABIE41_RS18110 0.75 +0.7 3,730,439 - ABIE41_RS18110 0.75 -0.5 3,730,444 + ABIE41_RS18110 0.75 +0.3 3,731,028 + ABIE41_RS18115 0.17 -0.2 3,731,029 - ABIE41_RS18115 0.18 -0.0 3,731,029 - ABIE41_RS18115 0.18 -1.0 3,731,029 - ABIE41_RS18115 0.18 +0.3 3,731,073 + ABIE41_RS18115 0.24 -0.6 3,731,074 - ABIE41_RS18115 0.24 +0.4 3,731,074 - ABIE41_RS18115 0.24 -0.7 3,731,092 + ABIE41_RS18115 0.27 -0.5 3,731,249 + ABIE41_RS18115 0.49 +0.1 3,731,249 + ABIE41_RS18115 0.49 +0.5 3,731,250 - ABIE41_RS18115 0.49 +1.4 3,731,250 - ABIE41_RS18115 0.49 +1.1 3,731,250 - ABIE41_RS18115 0.49 -0.3 3,731,274 + ABIE41_RS18115 0.53 +0.1 3,731,274 + ABIE41_RS18115 0.53 +0.8 3,731,274 + ABIE41_RS18115 0.53 -1.8 3,731,274 + ABIE41_RS18115 0.53 -0.5 3,731,274 + ABIE41_RS18115 0.53 -0.6 3,731,275 - ABIE41_RS18115 0.53 +0.7 3,731,275 - ABIE41_RS18115 0.53 +1.3 3,731,275 - ABIE41_RS18115 0.53 +0.3 3,731,571 + +0.1 3,731,618 + -0.1 3,731,619 - +1.1 3,731,730 + ABIE41_RS18120 0.16 -1.6 3,732,326 + -0.8 3,732,326 + -0.3 3,732,327 - -0.1 3,732,327 - -0.7 3,732,327 - -0.1 3,732,327 - -2.2 3,732,472 + +0.1 3,732,556 + ABIE41_RS18125 0.16 +0.1 3,732,556 + ABIE41_RS18125 0.16 +0.0
Or see this region's nucleotide sequence