Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01835 and ABIE41_RS01840 are separated by 2 nucleotides ABIE41_RS01840 and ABIE41_RS01845 are separated by 108 nucleotides ABIE41_RS01845 and ABIE41_RS01850 are separated by 12 nucleotides ABIE41_RS01850 and ABIE41_RS01855 are separated by 200 nucleotides
ABIE41_RS01835: ABIE41_RS01835 - cobyrinate a,c-diamide synthase, at 371,503 to 372,822
_RS01835
ABIE41_RS01840: ABIE41_RS01840 - 5,6-dimethylbenzimidazole synthase, at 372,825 to 373,448
_RS01840
ABIE41_RS01845: ABIE41_RS01845 - 3-oxoacid CoA-transferase subunit B, at 373,557 to 374,210
_RS01845
ABIE41_RS01850: ABIE41_RS01850 - CoA transferase subunit A, at 374,223 to 374,927
_RS01850
ABIE41_RS01855: ABIE41_RS01855 - caspase family protein, at 375,128 to 376,795
_RS01855
Position (kb) 373
374
375 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 373.090 kb on - strand, within ABIE41_RS01840 at 373.113 kb on + strand, within ABIE41_RS01840 at 373.114 kb on - strand, within ABIE41_RS01840 at 373.114 kb on - strand, within ABIE41_RS01840 at 373.114 kb on - strand, within ABIE41_RS01840 at 373.114 kb on - strand, within ABIE41_RS01840 at 373.233 kb on + strand, within ABIE41_RS01840 at 373.234 kb on - strand, within ABIE41_RS01840 at 373.234 kb on - strand, within ABIE41_RS01840 at 373.234 kb on - strand, within ABIE41_RS01840 at 373.234 kb on - strand, within ABIE41_RS01840 at 373.446 kb on + strand at 374.038 kb on + strand, within ABIE41_RS01845 at 374.038 kb on + strand, within ABIE41_RS01845 at 374.039 kb on - strand, within ABIE41_RS01845 at 374.107 kb on + strand, within ABIE41_RS01845 at 374.107 kb on + strand, within ABIE41_RS01845 at 374.107 kb on + strand, within ABIE41_RS01845 at 374.107 kb on + strand, within ABIE41_RS01845 at 374.107 kb on + strand, within ABIE41_RS01845 at 374.107 kb on + strand, within ABIE41_RS01845 at 374.108 kb on - strand, within ABIE41_RS01845 at 374.108 kb on - strand, within ABIE41_RS01845 at 374.108 kb on - strand, within ABIE41_RS01845 at 374.108 kb on - strand, within ABIE41_RS01845 at 374.108 kb on - strand, within ABIE41_RS01845 at 374.108 kb on - strand, within ABIE41_RS01845 at 374.108 kb on - strand, within ABIE41_RS01845 at 374.149 kb on + strand at 374.149 kb on + strand at 374.149 kb on + strand at 374.150 kb on - strand at 374.150 kb on - strand at 374.426 kb on - strand, within ABIE41_RS01850 at 374.503 kb on + strand, within ABIE41_RS01850 at 374.503 kb on + strand, within ABIE41_RS01850 at 374.504 kb on - strand, within ABIE41_RS01850 at 374.504 kb on - strand, within ABIE41_RS01850 at 374.662 kb on + strand, within ABIE41_RS01850 at 374.662 kb on + strand, within ABIE41_RS01850 at 374.662 kb on + strand, within ABIE41_RS01850 at 374.662 kb on + strand, within ABIE41_RS01850 at 374.662 kb on + strand, within ABIE41_RS01850 at 374.662 kb on + strand, within ABIE41_RS01850 at 374.663 kb on - strand, within ABIE41_RS01850 at 374.663 kb on - strand, within ABIE41_RS01850 at 374.663 kb on - strand, within ABIE41_RS01850 at 374.663 kb on - strand, within ABIE41_RS01850 at 374.695 kb on + strand, within ABIE41_RS01850 at 374.695 kb on + strand, within ABIE41_RS01850 at 374.695 kb on + strand, within ABIE41_RS01850 at 374.696 kb on - strand, within ABIE41_RS01850 at 374.696 kb on - strand, within ABIE41_RS01850 at 374.914 kb on + strand at 374.915 kb on - strand at 374.930 kb on + strand at 374.930 kb on + strand at 374.979 kb on + strand at 374.979 kb on + strand at 374.979 kb on + strand at 374.979 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 373,090 - ABIE41_RS01840 0.42 -0.2 373,113 + ABIE41_RS01840 0.46 +0.3 373,114 - ABIE41_RS01840 0.46 -0.5 373,114 - ABIE41_RS01840 0.46 -1.3 373,114 - ABIE41_RS01840 0.46 +1.9 373,114 - ABIE41_RS01840 0.46 +0.6 373,233 + ABIE41_RS01840 0.65 +0.6 373,234 - ABIE41_RS01840 0.66 -0.4 373,234 - ABIE41_RS01840 0.66 -0.2 373,234 - ABIE41_RS01840 0.66 -0.1 373,234 - ABIE41_RS01840 0.66 -0.5 373,446 + +1.5 374,038 + ABIE41_RS01845 0.74 -0.1 374,038 + ABIE41_RS01845 0.74 +0.2 374,039 - ABIE41_RS01845 0.74 -0.5 374,107 + ABIE41_RS01845 0.84 +0.1 374,107 + ABIE41_RS01845 0.84 -0.1 374,107 + ABIE41_RS01845 0.84 -0.1 374,107 + ABIE41_RS01845 0.84 -0.4 374,107 + ABIE41_RS01845 0.84 -0.4 374,107 + ABIE41_RS01845 0.84 +1.7 374,108 - ABIE41_RS01845 0.84 -0.6 374,108 - ABIE41_RS01845 0.84 +0.2 374,108 - ABIE41_RS01845 0.84 -1.0 374,108 - ABIE41_RS01845 0.84 -0.4 374,108 - ABIE41_RS01845 0.84 -0.2 374,108 - ABIE41_RS01845 0.84 -0.1 374,108 - ABIE41_RS01845 0.84 +0.9 374,149 + +1.1 374,149 + -0.2 374,149 + -2.1 374,150 - -1.0 374,150 - +2.5 374,426 - ABIE41_RS01850 0.29 -1.0 374,503 + ABIE41_RS01850 0.40 -1.0 374,503 + ABIE41_RS01850 0.40 +0.2 374,504 - ABIE41_RS01850 0.40 -1.7 374,504 - ABIE41_RS01850 0.40 -0.1 374,662 + ABIE41_RS01850 0.62 +0.1 374,662 + ABIE41_RS01850 0.62 +0.0 374,662 + ABIE41_RS01850 0.62 -2.1 374,662 + ABIE41_RS01850 0.62 -0.2 374,662 + ABIE41_RS01850 0.62 -1.4 374,662 + ABIE41_RS01850 0.62 -1.1 374,663 - ABIE41_RS01850 0.62 +2.3 374,663 - ABIE41_RS01850 0.62 -0.0 374,663 - ABIE41_RS01850 0.62 +0.1 374,663 - ABIE41_RS01850 0.62 -0.5 374,695 + ABIE41_RS01850 0.67 -1.4 374,695 + ABIE41_RS01850 0.67 +0.2 374,695 + ABIE41_RS01850 0.67 -0.5 374,696 - ABIE41_RS01850 0.67 -0.2 374,696 - ABIE41_RS01850 0.67 -1.3 374,914 + -0.5 374,915 - -0.4 374,930 + -0.5 374,930 + +3.6 374,979 + -0.2 374,979 + +1.2 374,979 + -0.7 374,979 + +0.1
Or see this region's nucleotide sequence