Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26450

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26445 and ABID97_RS26450 are separated by 16 nucleotidesABID97_RS26450 and ABID97_RS26455 are separated by 12 nucleotidesABID97_RS26455 and ABID97_RS26460 overlap by 4 nucleotides ABID97_RS26445: ABID97_RS26445 - LysR family transcriptional regulator, at 207,420 to 208,364 _RS26445 ABID97_RS26450: ABID97_RS26450 - hypothetical protein, at 208,381 to 208,749 _RS26450 ABID97_RS26455: ABID97_RS26455 - cytochrome c oxidase subunit 3, at 208,762 to 209,361 _RS26455 ABID97_RS26460: ABID97_RS26460 - cytochrome c oxidase subunit I, at 209,358 to 211,322 _RS26460 Position (kb) 208 209Strain fitness (log2 ratio) -1 0 1at 207.392 kb on + strandat 207.393 kb on - strandat 208.668 kb on - strand, within ABID97_RS26450at 208.829 kb on + strand, within ABID97_RS26455at 208.829 kb on + strand, within ABID97_RS26455at 208.913 kb on + strand, within ABID97_RS26455at 208.914 kb on - strand, within ABID97_RS26455at 208.914 kb on - strand, within ABID97_RS26455at 209.223 kb on - strand, within ABID97_RS26455

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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207,392 + -0.1
207,393 - -0.2
208,668 - ABID97_RS26450 0.78 +0.2
208,829 + ABID97_RS26455 0.11 -1.0
208,829 + ABID97_RS26455 0.11 +0.1
208,913 + ABID97_RS26455 0.25 -0.2
208,914 - ABID97_RS26455 0.25 -0.2
208,914 - ABID97_RS26455 0.25 -0.3
209,223 - ABID97_RS26455 0.77 +0.0

Or see this region's nucleotide sequence