Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20180

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20175 and ABID97_RS20180 are separated by 153 nucleotidesABID97_RS20180 and ABID97_RS20185 are separated by 55 nucleotidesABID97_RS20185 and ABID97_RS20190 overlap by 4 nucleotides ABID97_RS20175: ABID97_RS20175 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 4,166,927 to 4,168,150 _RS20175 ABID97_RS20180: ABID97_RS20180 - CTP synthase, at 4,168,304 to 4,169,983 _RS20180 ABID97_RS20185: ABID97_RS20185 - 3-deoxy-8-phosphooctulonate synthase, at 4,170,039 to 4,170,896 _RS20185 ABID97_RS20190: ABID97_RS20190 - DUF1330 domain-containing protein, at 4,170,893 to 4,171,183 _RS20190 Position (kb) 4168 4169 4170Strain fitness (log2 ratio) -1 0 1at 4168.163 kb on + strandat 4168.163 kb on + strandat 4168.163 kb on + strandat 4168.164 kb on - strandat 4168.164 kb on - strandat 4168.257 kb on + strandat 4168.257 kb on + strandat 4168.257 kb on + strandat 4168.257 kb on + strandat 4168.257 kb on + strandat 4168.257 kb on + strandat 4168.258 kb on - strandat 4170.038 kb on + strandat 4170.953 kb on + strand, within ABID97_RS20190at 4170.954 kb on - strand, within ABID97_RS20190at 4170.954 kb on - strand, within ABID97_RS20190at 4170.954 kb on - strand, within ABID97_RS20190

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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4,168,163 + +0.4
4,168,163 + +0.2
4,168,163 + +0.1
4,168,164 - -1.1
4,168,164 - -0.0
4,168,257 + +1.1
4,168,257 + +0.3
4,168,257 + +0.6
4,168,257 + -0.1
4,168,257 + -0.2
4,168,257 + +0.7
4,168,258 - -0.5
4,170,038 + -1.0
4,170,953 + ABID97_RS20190 0.21 -0.1
4,170,954 - ABID97_RS20190 0.21 -1.6
4,170,954 - ABID97_RS20190 0.21 -0.9
4,170,954 - ABID97_RS20190 0.21 -1.0

Or see this region's nucleotide sequence