Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18615

Experiment: L-Glutamine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS18610 and ABID97_RS18615 are separated by 19 nucleotidesABID97_RS18615 and ABID97_RS18620 are separated by 3 nucleotides ABID97_RS18610: ABID97_RS18610 - long-chain fatty acid--CoA ligase, at 3,835,648 to 3,837,207 _RS18610 ABID97_RS18615: ABID97_RS18615 - acetyl-CoA acetyltransferase, at 3,837,227 to 3,838,429 _RS18615 ABID97_RS18620: ABID97_RS18620 - 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein, at 3,838,433 to 3,839,908 _RS18620 Position (kb) 3837 3838 3839Strain fitness (log2 ratio) -1 0 1at 3836.244 kb on - strand, within ABID97_RS18610at 3836.259 kb on - strand, within ABID97_RS18610at 3836.370 kb on - strand, within ABID97_RS18610at 3836.708 kb on + strand, within ABID97_RS18610at 3836.783 kb on + strand, within ABID97_RS18610at 3836.823 kb on - strand, within ABID97_RS18610at 3837.135 kb on - strandat 3837.192 kb on + strandat 3837.192 kb on + strandat 3837.193 kb on - strandat 3837.640 kb on - strand, within ABID97_RS18615at 3837.640 kb on - strand, within ABID97_RS18615at 3837.967 kb on - strand, within ABID97_RS18615at 3838.327 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
remove
3,836,244 - ABID97_RS18610 0.38 +0.1
3,836,259 - ABID97_RS18610 0.39 +0.7
3,836,370 - ABID97_RS18610 0.46 +1.3
3,836,708 + ABID97_RS18610 0.68 -0.4
3,836,783 + ABID97_RS18610 0.73 +0.6
3,836,823 - ABID97_RS18610 0.75 -0.6
3,837,135 - +0.1
3,837,192 + -0.3
3,837,192 + -0.4
3,837,193 - +0.2
3,837,640 - ABID97_RS18615 0.34 -1.6
3,837,640 - ABID97_RS18615 0.34 -0.2
3,837,967 - ABID97_RS18615 0.62 -0.4
3,838,327 - -0.2

Or see this region's nucleotide sequence