Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18510

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18500 and ABID97_RS18505 are separated by 36 nucleotidesABID97_RS18505 and ABID97_RS18510 are separated by 6 nucleotidesABID97_RS18510 and ABID97_RS18515 are separated by 142 nucleotidesABID97_RS18515 and ABID97_RS18520 are separated by 37 nucleotides ABID97_RS18500: ABID97_RS18500 - CaiB/BaiF CoA-transferase family protein, at 3,812,833 to 3,814,005 _RS18500 ABID97_RS18505: ABID97_RS18505 - transglutaminase family protein, at 3,814,042 to 3,814,719 _RS18505 ABID97_RS18510: ABID97_RS18510 - acyl-CoA dehydrogenase family protein, at 3,814,726 to 3,815,889 _RS18510 ABID97_RS18515: ABID97_RS18515 - TetR/AcrR family transcriptional regulator, at 3,816,032 to 3,816,625 _RS18515 ABID97_RS18520: ABID97_RS18520 - ABC transporter substrate-binding protein, at 3,816,663 to 3,817,808 _RS18520 Position (kb) 3814 3815 3816Strain fitness (log2 ratio) -1 0 1at 3814.082 kb on + strandat 3814.152 kb on - strand, within ABID97_RS18505at 3814.863 kb on + strand, within ABID97_RS18510at 3815.069 kb on + strand, within ABID97_RS18510at 3815.069 kb on + strand, within ABID97_RS18510at 3815.162 kb on + strand, within ABID97_RS18510at 3815.162 kb on + strand, within ABID97_RS18510at 3815.537 kb on + strand, within ABID97_RS18510at 3815.584 kb on - strand, within ABID97_RS18510at 3816.056 kb on + strandat 3816.177 kb on - strand, within ABID97_RS18515at 3816.482 kb on + strand, within ABID97_RS18515at 3816.491 kb on + strand, within ABID97_RS18515

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,814,082 + +0.2
3,814,152 - ABID97_RS18505 0.16 +0.7
3,814,863 + ABID97_RS18510 0.12 +0.4
3,815,069 + ABID97_RS18510 0.29 -0.4
3,815,069 + ABID97_RS18510 0.29 -0.6
3,815,162 + ABID97_RS18510 0.37 -0.4
3,815,162 + ABID97_RS18510 0.37 -0.4
3,815,537 + ABID97_RS18510 0.70 -1.1
3,815,584 - ABID97_RS18510 0.74 -0.6
3,816,056 + -0.1
3,816,177 - ABID97_RS18515 0.24 -0.4
3,816,482 + ABID97_RS18515 0.76 -0.2
3,816,491 + ABID97_RS18515 0.77 -0.7

Or see this region's nucleotide sequence