Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14905

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14900 and ABID97_RS14905 are separated by 184 nucleotidesABID97_RS14905 and ABID97_RS14910 are separated by 59 nucleotides ABID97_RS14900: ABID97_RS14900 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 3,094,672 to 3,095,496 _RS14900 ABID97_RS14905: ABID97_RS14905 - 2-isopropylmalate synthase, at 3,095,681 to 3,097,384 _RS14905 ABID97_RS14910: ABID97_RS14910 - 2-isopropylmalate synthase, at 3,097,444 to 3,098,982 _RS14910 Position (kb) 3095 3096 3097 3098Strain fitness (log2 ratio) -3 -2 -1 0 1at 3095.510 kb on + strandat 3095.555 kb on - strandat 3095.705 kb on + strandat 3095.706 kb on - strandat 3096.062 kb on + strand, within ABID97_RS14905at 3096.200 kb on + strand, within ABID97_RS14905at 3096.551 kb on + strand, within ABID97_RS14905at 3096.552 kb on - strand, within ABID97_RS14905at 3096.653 kb on + strand, within ABID97_RS14905at 3096.653 kb on + strand, within ABID97_RS14905at 3096.653 kb on + strand, within ABID97_RS14905at 3096.653 kb on + strand, within ABID97_RS14905at 3096.654 kb on - strand, within ABID97_RS14905at 3096.654 kb on - strand, within ABID97_RS14905at 3096.654 kb on - strand, within ABID97_RS14905at 3096.672 kb on - strand, within ABID97_RS14905at 3096.739 kb on + strand, within ABID97_RS14905at 3096.739 kb on + strand, within ABID97_RS14905at 3096.755 kb on + strand, within ABID97_RS14905at 3096.791 kb on + strand, within ABID97_RS14905at 3096.792 kb on - strand, within ABID97_RS14905at 3096.792 kb on - strand, within ABID97_RS14905at 3096.792 kb on - strand, within ABID97_RS14905at 3096.842 kb on + strand, within ABID97_RS14905at 3096.842 kb on + strand, within ABID97_RS14905at 3096.842 kb on + strand, within ABID97_RS14905at 3096.842 kb on + strand, within ABID97_RS14905at 3096.843 kb on - strand, within ABID97_RS14905at 3096.980 kb on + strand, within ABID97_RS14905at 3097.181 kb on + strand, within ABID97_RS14905at 3097.181 kb on + strand, within ABID97_RS14905at 3097.229 kb on + strandat 3097.230 kb on - strandat 3097.461 kb on - strandat 3097.981 kb on + strand, within ABID97_RS14910at 3098.207 kb on - strand, within ABID97_RS14910at 3098.207 kb on - strand, within ABID97_RS14910at 3098.377 kb on + strand, within ABID97_RS14910at 3098.378 kb on - strand, within ABID97_RS14910at 3098.378 kb on - strand, within ABID97_RS14910

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,095,510 + -0.3
3,095,555 - +0.2
3,095,705 + -2.2
3,095,706 - -2.8
3,096,062 + ABID97_RS14905 0.22 +0.6
3,096,200 + ABID97_RS14905 0.30 -0.9
3,096,551 + ABID97_RS14905 0.51 -1.3
3,096,552 - ABID97_RS14905 0.51 -2.4
3,096,653 + ABID97_RS14905 0.57 -3.0
3,096,653 + ABID97_RS14905 0.57 -2.0
3,096,653 + ABID97_RS14905 0.57 -1.0
3,096,653 + ABID97_RS14905 0.57 -1.5
3,096,654 - ABID97_RS14905 0.57 -2.3
3,096,654 - ABID97_RS14905 0.57 -2.4
3,096,654 - ABID97_RS14905 0.57 -3.3
3,096,672 - ABID97_RS14905 0.58 -1.8
3,096,739 + ABID97_RS14905 0.62 -1.4
3,096,739 + ABID97_RS14905 0.62 -0.6
3,096,755 + ABID97_RS14905 0.63 -1.6
3,096,791 + ABID97_RS14905 0.65 +0.7
3,096,792 - ABID97_RS14905 0.65 -1.5
3,096,792 - ABID97_RS14905 0.65 -1.7
3,096,792 - ABID97_RS14905 0.65 -2.2
3,096,842 + ABID97_RS14905 0.68 -2.7
3,096,842 + ABID97_RS14905 0.68 -1.3
3,096,842 + ABID97_RS14905 0.68 -0.3
3,096,842 + ABID97_RS14905 0.68 -1.6
3,096,843 - ABID97_RS14905 0.68 -2.2
3,096,980 + ABID97_RS14905 0.76 +0.3
3,097,181 + ABID97_RS14905 0.88 +0.0
3,097,181 + ABID97_RS14905 0.88 -1.1
3,097,229 + -0.6
3,097,230 - +0.1
3,097,461 - -0.0
3,097,981 + ABID97_RS14910 0.35 +0.1
3,098,207 - ABID97_RS14910 0.50 -1.1
3,098,207 - ABID97_RS14910 0.50 -0.0
3,098,377 + ABID97_RS14910 0.61 +0.0
3,098,378 - ABID97_RS14910 0.61 +0.3
3,098,378 - ABID97_RS14910 0.61 +0.1

Or see this region's nucleotide sequence