Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13535

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13530 and ABID97_RS13535 are separated by 804 nucleotidesABID97_RS13535 and ABID97_RS13540 are separated by 38 nucleotides ABID97_RS13530: ABID97_RS13530 - DUF1329 domain-containing protein, at 2,817,852 to 2,819,222 _RS13530 ABID97_RS13535: ABID97_RS13535 - aldehyde dehydrogenase, at 2,820,027 to 2,821,505 _RS13535 ABID97_RS13540: ABID97_RS13540 - FAD-dependent oxidoreductase, at 2,821,544 to 2,823,007 _RS13540 Position (kb) 2820 2821 2822Strain fitness (log2 ratio) -3 -2 -1 0 1at 2819.054 kb on + strand, within ABID97_RS13530at 2819.088 kb on + strandat 2819.110 kb on - strandat 2819.835 kb on - strandat 2820.105 kb on + strandat 2820.363 kb on + strand, within ABID97_RS13535at 2821.700 kb on + strand, within ABID97_RS13540at 2821.701 kb on - strand, within ABID97_RS13540at 2822.255 kb on + strand, within ABID97_RS13540at 2822.259 kb on - strand, within ABID97_RS13540at 2822.320 kb on - strand, within ABID97_RS13540

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,819,054 + ABID97_RS13530 0.88 -2.8
2,819,088 + -0.3
2,819,110 - -0.5
2,819,835 - +0.7
2,820,105 + -0.2
2,820,363 + ABID97_RS13535 0.23 -0.4
2,821,700 + ABID97_RS13540 0.11 +0.3
2,821,701 - ABID97_RS13540 0.11 +1.4
2,822,255 + ABID97_RS13540 0.49 -0.0
2,822,259 - ABID97_RS13540 0.49 +0.0
2,822,320 - ABID97_RS13540 0.53 +0.3

Or see this region's nucleotide sequence