Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06650

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06640 and ABID97_RS06645 are separated by 113 nucleotidesABID97_RS06645 and ABID97_RS06650 are separated by 34 nucleotidesABID97_RS06650 and ABID97_RS06655 are separated by 68 nucleotidesABID97_RS06655 and ABID97_RS06660 are separated by 117 nucleotidesABID97_RS06660 and ABID97_RS06665 are separated by 30 nucleotides ABID97_RS06640: ABID97_RS06640 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 1,403,192 to 1,405,072 _RS06640 ABID97_RS06645: ABID97_RS06645 - DUF6766 family protein, at 1,405,186 to 1,405,602 _RS06645 ABID97_RS06650: ABID97_RS06650 - DUF1330 domain-containing protein, at 1,405,637 to 1,405,927 _RS06650 ABID97_RS06655: ABID97_RS06655 - hypothetical protein, at 1,405,996 to 1,406,307 _RS06655 ABID97_RS06660: ABID97_RS06660 - helix-turn-helix transcriptional regulator, at 1,406,425 to 1,406,694 _RS06660 ABID97_RS06665: ABID97_RS06665 - GIY-YIG nuclease family protein, at 1,406,725 to 1,407,003 _RS06665 Position (kb) 1405 1406Strain fitness (log2 ratio) -2 -1 0 1 2at 1405.211 kb on - strandat 1405.285 kb on + strand, within ABID97_RS06645at 1405.286 kb on - strand, within ABID97_RS06645at 1405.286 kb on - strand, within ABID97_RS06645at 1405.286 kb on - strand, within ABID97_RS06645at 1405.333 kb on + strand, within ABID97_RS06645at 1405.333 kb on + strand, within ABID97_RS06645at 1405.334 kb on - strand, within ABID97_RS06645at 1405.334 kb on - strand, within ABID97_RS06645at 1405.334 kb on - strand, within ABID97_RS06645at 1405.546 kb on + strand, within ABID97_RS06645at 1405.546 kb on + strand, within ABID97_RS06645at 1405.547 kb on - strand, within ABID97_RS06645at 1405.788 kb on + strand, within ABID97_RS06650at 1405.788 kb on + strand, within ABID97_RS06650at 1405.914 kb on + strandat 1405.943 kb on + strandat 1405.960 kb on + strandat 1405.960 kb on + strandat 1405.961 kb on - strandat 1405.961 kb on - strandat 1405.962 kb on + strandat 1405.962 kb on + strandat 1406.289 kb on + strandat 1406.384 kb on + strandat 1406.384 kb on + strandat 1406.384 kb on + strandat 1406.384 kb on + strandat 1406.384 kb on + strandat 1406.385 kb on - strandat 1406.385 kb on - strandat 1406.385 kb on - strandat 1406.385 kb on - strandat 1406.385 kb on - strandat 1406.477 kb on + strand, within ABID97_RS06660at 1406.478 kb on - strand, within ABID97_RS06660at 1406.604 kb on + strand, within ABID97_RS06660at 1406.604 kb on + strand, within ABID97_RS06660at 1406.605 kb on - strand, within ABID97_RS06660at 1406.701 kb on - strandat 1406.770 kb on + strand, within ABID97_RS06665at 1406.801 kb on - strand, within ABID97_RS06665

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,405,211 - -0.1
1,405,285 + ABID97_RS06645 0.24 -0.1
1,405,286 - ABID97_RS06645 0.24 +0.1
1,405,286 - ABID97_RS06645 0.24 -0.5
1,405,286 - ABID97_RS06645 0.24 -0.0
1,405,333 + ABID97_RS06645 0.35 -0.5
1,405,333 + ABID97_RS06645 0.35 -0.1
1,405,334 - ABID97_RS06645 0.35 -0.5
1,405,334 - ABID97_RS06645 0.35 -0.2
1,405,334 - ABID97_RS06645 0.35 -0.2
1,405,546 + ABID97_RS06645 0.86 +0.3
1,405,546 + ABID97_RS06645 0.86 -1.2
1,405,547 - ABID97_RS06645 0.87 -1.0
1,405,788 + ABID97_RS06650 0.52 -0.2
1,405,788 + ABID97_RS06650 0.52 -0.7
1,405,914 + +0.6
1,405,943 + -0.2
1,405,960 + -0.0
1,405,960 + +0.0
1,405,961 - +0.3
1,405,961 - -0.6
1,405,962 + -0.4
1,405,962 + -0.4
1,406,289 + -2.1
1,406,384 + +0.6
1,406,384 + +0.5
1,406,384 + +0.1
1,406,384 + +2.6
1,406,384 + +0.2
1,406,385 - +1.4
1,406,385 - +0.1
1,406,385 - -0.5
1,406,385 - +0.8
1,406,385 - +0.1
1,406,477 + ABID97_RS06660 0.19 +0.7
1,406,478 - ABID97_RS06660 0.20 -0.1
1,406,604 + ABID97_RS06660 0.66 +0.8
1,406,604 + ABID97_RS06660 0.66 +0.5
1,406,605 - ABID97_RS06660 0.67 +0.1
1,406,701 - +0.5
1,406,770 + ABID97_RS06665 0.16 -0.1
1,406,801 - ABID97_RS06665 0.27 +0.4

Or see this region's nucleotide sequence