Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04380 and ABID97_RS04385 are separated by 131 nucleotides ABID97_RS04385 and ABID97_RS04390 overlap by 28 nucleotides
ABID97_RS04380: ABID97_RS04380 - DUF4132 domain-containing protein, at 901,252 to 905,070
_RS04380
ABID97_RS04385: ABID97_RS04385 - hypothetical protein, at 905,202 to 905,807
_RS04385
ABID97_RS04390: ABID97_RS04390 - VanW family protein, at 905,780 to 907,657
_RS04390
Position (kb) 905
906 Strain fitness (log2 ratio) -1
0
1 at 904.390 kb on + strand, within ABID97_RS04380 at 904.391 kb on - strand, within ABID97_RS04380 at 904.391 kb on - strand, within ABID97_RS04380 at 904.618 kb on + strand, within ABID97_RS04380 at 904.618 kb on + strand, within ABID97_RS04380 at 904.618 kb on + strand, within ABID97_RS04380 at 904.618 kb on + strand, within ABID97_RS04380 at 904.618 kb on + strand, within ABID97_RS04380 at 904.618 kb on + strand, within ABID97_RS04380 at 905.006 kb on - strand at 905.068 kb on + strand at 905.187 kb on + strand at 905.187 kb on + strand at 905.187 kb on + strand at 905.188 kb on - strand at 905.188 kb on - strand at 905.188 kb on - strand at 905.188 kb on - strand at 905.290 kb on - strand, within ABID97_RS04385 at 905.421 kb on + strand, within ABID97_RS04385 at 905.422 kb on - strand, within ABID97_RS04385 at 905.623 kb on - strand, within ABID97_RS04385 at 905.623 kb on - strand, within ABID97_RS04385 at 906.338 kb on + strand, within ABID97_RS04390 at 906.339 kb on - strand, within ABID97_RS04390 at 906.339 kb on - strand, within ABID97_RS04390 at 906.339 kb on - strand, within ABID97_RS04390 at 906.617 kb on + strand, within ABID97_RS04390 at 906.618 kb on - strand, within ABID97_RS04390
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 904,390 + ABID97_RS04380 0.82 -0.4 904,391 - ABID97_RS04380 0.82 -0.4 904,391 - ABID97_RS04380 0.82 +0.0 904,618 + ABID97_RS04380 0.88 +0.6 904,618 + ABID97_RS04380 0.88 -0.4 904,618 + ABID97_RS04380 0.88 -0.1 904,618 + ABID97_RS04380 0.88 -1.4 904,618 + ABID97_RS04380 0.88 -0.1 904,618 + ABID97_RS04380 0.88 -0.7 905,006 - +0.0 905,068 + -0.4 905,187 + +0.1 905,187 + -1.0 905,187 + +0.1 905,188 - -0.4 905,188 - +0.1 905,188 - +0.2 905,188 - +0.2 905,290 - ABID97_RS04385 0.15 -0.4 905,421 + ABID97_RS04385 0.36 -0.6 905,422 - ABID97_RS04385 0.36 +0.1 905,623 - ABID97_RS04385 0.69 -1.0 905,623 - ABID97_RS04385 0.69 -1.2 906,338 + ABID97_RS04390 0.30 -0.2 906,339 - ABID97_RS04390 0.30 -0.5 906,339 - ABID97_RS04390 0.30 +0.1 906,339 - ABID97_RS04390 0.30 -1.0 906,617 + ABID97_RS04390 0.45 -0.4 906,618 - ABID97_RS04390 0.45 +0.2
Or see this region's nucleotide sequence