Experiment: 4-Hydroxyvalerate (C) (40mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4759 and PP_4760 are separated by 71 nucleotides PP_4760 and PP_4761 are separated by 164 nucleotides PP_4761 and PP_4762 overlap by 4 nucleotides
PP_4759: PP_4759 - transcriptional regulator, GntR family, at 5,419,315 to 5,420,016
_4759
PP_4760: PP_4760 - Alcohol dehydrogenase, zinc-containing, at 5,420,088 to 5,421,098
_4760
PP_4761: PP_4761 - Hydrolase, haloacid dehalogenase-like family, at 5,421,263 to 5,421,853
_4761
PP_4762: PP_4762 - Acyl-CoA thioesterase II, at 5,421,850 to 5,422,719
_4762
Position (kb) 5420
5421
5422 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5419.122 kb on + strand at 5419.175 kb on + strand at 5419.194 kb on - strand at 5419.227 kb on - strand at 5419.534 kb on - strand, within PP_4759 at 5419.534 kb on - strand, within PP_4759 at 5419.620 kb on + strand, within PP_4759 at 5419.621 kb on - strand, within PP_4759 at 5419.708 kb on + strand, within PP_4759 at 5419.708 kb on + strand, within PP_4759 at 5419.708 kb on + strand, within PP_4759 at 5419.709 kb on - strand, within PP_4759 at 5419.709 kb on - strand, within PP_4759 at 5419.709 kb on - strand, within PP_4759 at 5419.709 kb on - strand, within PP_4759 at 5419.709 kb on - strand, within PP_4759 at 5419.795 kb on + strand, within PP_4759 at 5419.796 kb on - strand, within PP_4759 at 5419.895 kb on - strand, within PP_4759 at 5419.895 kb on - strand, within PP_4759 at 5420.004 kb on - strand at 5420.030 kb on + strand at 5420.030 kb on + strand at 5420.030 kb on + strand at 5420.031 kb on - strand at 5420.031 kb on - strand at 5420.039 kb on + strand at 5420.039 kb on + strand at 5420.039 kb on + strand at 5420.040 kb on - strand at 5420.040 kb on - strand at 5420.040 kb on - strand at 5420.041 kb on + strand at 5420.041 kb on + strand at 5420.042 kb on - strand at 5420.042 kb on - strand at 5420.042 kb on - strand at 5420.042 kb on - strand at 5420.063 kb on + strand at 5420.063 kb on + strand at 5420.063 kb on + strand at 5420.064 kb on - strand at 5420.073 kb on + strand at 5420.074 kb on - strand at 5420.215 kb on - strand, within PP_4760 at 5420.215 kb on - strand, within PP_4760 at 5420.467 kb on + strand, within PP_4760 at 5420.467 kb on + strand, within PP_4760 at 5420.468 kb on - strand, within PP_4760 at 5420.971 kb on + strand, within PP_4760 at 5420.972 kb on - strand, within PP_4760 at 5421.075 kb on + strand at 5421.075 kb on + strand at 5421.076 kb on - strand at 5421.076 kb on - strand at 5421.079 kb on + strand at 5421.079 kb on + strand at 5421.079 kb on + strand at 5421.079 kb on + strand at 5421.080 kb on - strand at 5421.080 kb on - strand at 5421.140 kb on - strand at 5421.211 kb on - strand at 5421.584 kb on - strand, within PP_4761 at 5421.980 kb on + strand, within PP_4762 at 5421.981 kb on - strand, within PP_4762 at 5421.981 kb on - strand, within PP_4762
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxyvalerate (C) (40mM) remove 5,419,122 + -0.3 5,419,175 + -0.2 5,419,194 - -0.6 5,419,227 - +1.5 5,419,534 - PP_4759 0.31 -0.2 5,419,534 - PP_4759 0.31 +0.1 5,419,620 + PP_4759 0.43 -0.5 5,419,621 - PP_4759 0.44 -0.5 5,419,708 + PP_4759 0.56 -0.2 5,419,708 + PP_4759 0.56 +1.2 5,419,708 + PP_4759 0.56 -0.5 5,419,709 - PP_4759 0.56 +0.2 5,419,709 - PP_4759 0.56 +0.3 5,419,709 - PP_4759 0.56 +0.9 5,419,709 - PP_4759 0.56 +0.2 5,419,709 - PP_4759 0.56 +0.3 5,419,795 + PP_4759 0.68 +0.5 5,419,796 - PP_4759 0.69 -0.8 5,419,895 - PP_4759 0.83 +0.4 5,419,895 - PP_4759 0.83 +0.2 5,420,004 - +0.3 5,420,030 + +0.7 5,420,030 + +0.1 5,420,030 + -0.6 5,420,031 - +0.4 5,420,031 - -0.9 5,420,039 + -0.4 5,420,039 + +0.5 5,420,039 + -0.5 5,420,040 - +1.0 5,420,040 - -1.1 5,420,040 - -0.2 5,420,041 + -0.1 5,420,041 + +0.9 5,420,042 - +0.2 5,420,042 - -0.6 5,420,042 - -0.6 5,420,042 - -0.7 5,420,063 + -0.8 5,420,063 + +0.0 5,420,063 + +0.7 5,420,064 - -1.1 5,420,073 + -2.2 5,420,074 - -0.0 5,420,215 - PP_4760 0.13 +0.8 5,420,215 - PP_4760 0.13 -1.5 5,420,467 + PP_4760 0.37 +0.2 5,420,467 + PP_4760 0.37 +1.1 5,420,468 - PP_4760 0.38 +0.1 5,420,971 + PP_4760 0.87 -1.4 5,420,972 - PP_4760 0.87 -1.3 5,421,075 + +0.1 5,421,075 + +0.4 5,421,076 - -0.2 5,421,076 - +0.2 5,421,079 + +0.1 5,421,079 + -1.2 5,421,079 + -1.0 5,421,079 + -0.5 5,421,080 - +0.3 5,421,080 - -1.1 5,421,140 - +1.9 5,421,211 - +1.5 5,421,584 - PP_4761 0.54 +0.2 5,421,980 + PP_4762 0.15 -1.3 5,421,981 - PP_4762 0.15 -2.7 5,421,981 - PP_4762 0.15 -3.9
Or see this region's nucleotide sequence